View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0896_low_12 (Length: 383)
Name: NF0896_low_12
Description: NF0896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0896_low_12 |
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| [»] scaffold0599 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 39 - 375
Target Start/End: Original strand, 19880909 - 19881249
Alignment:
| Q |
39 |
atgctgcaacgattggcaaaactatacaaaccatatgtatcttttaagtccatgtacgtaatgttatggccttcaattatttgaaa--tttatctaccta |
136 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
19880909 |
atgctgcaacgattggcaaaactatacaaaccatatgtattttttaagtccatgtacgtaatgttatggccttcaattatttgaaaattttatctaccta |
19881008 |
T |
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| Q |
137 |
ggttaattttattca--atcatgaaccattattttattttcatttcagctttgatgacacaaacactgaaattttacggatggaaacaaagggtcatctt |
234 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
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| T |
19881009 |
ggttaattttattcataatcatgaaccattattttattttcatttcagctttgatgacacaaacactgaaattttacggatggcaacaaagggttatctt |
19881108 |
T |
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| Q |
235 |
aagatggagaatgaagaatttaactttgatccaactagcattgattgggcagactatatgatgaacacacacattcctggtctcttcaagtatcaaaaga |
334 |
Q |
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| T |
19881109 |
aagatggagaatgaagaatttaactttgatccaactagcattgattggacagactatatgatgaatacacacatccctggtctcattaagtatcaaacaa |
19881208 |
T |
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| Q |
335 |
aatagtcttcaaattacttcaaaaatggttggcttcatctc |
375 |
Q |
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| T |
19881209 |
gatagtcttcaaaatatttcaaaaatggttggcttcatctc |
19881249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 170 - 349
Target Start/End: Original strand, 19664100 - 19664279
Alignment:
| Q |
170 |
attttcatttcagctttgatgacacaaacactgaaattttacggatggaaacaaagggtcatcttaagatggagaatgaagaatttaactttgatccaac |
269 |
Q |
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| T |
19664100 |
attttcatttcagttttgatgacaccaacacggaaattttaaggatggcaacaaaggatcatctcaaggccgagaatgaagcattgaactttgaccccac |
19664199 |
T |
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| Q |
270 |
tagcattgattgggcagactatatgatgaacacacacattcctggtctcttcaagtatcaaaagaaatagtcttcaaatt |
349 |
Q |
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| T |
19664200 |
tagcattgattggacagactatatgatgaatacacacattcctggtctccttaagtatcaaacaaaatagtcttgaaatt |
19664279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 100
Target Start/End: Original strand, 19663964 - 19664018
Alignment:
| Q |
46 |
aacgattggcaaaactatacaaaccatatgtatcttttaagtccatgtacgtaat |
100 |
Q |
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| T |
19663964 |
aacgattggcaaaactatacagaccatttgtgttttttaagtctgtgtacgtaat |
19664018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 327
Target Start/End: Original strand, 19535235 - 19535292
Alignment:
| Q |
270 |
tagcattgattgggcagactatatgatgaacacacacattcctggtctcttcaagtat |
327 |
Q |
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| T |
19535235 |
tagcattaattggacaaactacatgatgaatacgcacattcctggtctcgtcaagtat |
19535292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0599 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: scaffold0599
Description:
Target: scaffold0599; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 43 - 375
Target Start/End: Original strand, 7046 - 7386
Alignment:
| Q |
43 |
tgcaacgattggcaaaactatacaaaccatatgtatcttttaagtccatgtacgtaatgttatggccttcaattatttg-----aaatttatctacctag |
137 |
Q |
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| T |
7046 |
tgcaacgatcggctaaactatacagaccatatgtgttttttaagtctgtgtacgttactttatgacctttaattaattattagaaaatttatctacctga |
7145 |
T |
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| Q |
138 |
gttaattttattca--atcatgaaccattattttatttt-catttcagctttgatgacacaaacactgaaattttacggatggaaacaaagggtcatctt |
234 |
Q |
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| T |
7146 |
gctaattctcctcataatcatgaaccattggattatttttcatttcagctttgatgatacaaacactgaaattttaaggatggcaacaaagggtcatctt |
7245 |
T |
|
| Q |
235 |
aagatggagaatgaagaatttaactttgatccaactagcattgattgggcagactatatgatgaacacacacattcctggtctcttcaagtatcaaaaga |
334 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||| || |
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| T |
7246 |
aaggtggagaatgaagaatttaactttgatccaactagcattgactggatggactatatgatgaacacacacattcctggtctcatcaagtatcaaatga |
7345 |
T |
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| Q |
335 |
aatagtcttcaaattacttcaaaaatggttggcttcatctc |
375 |
Q |
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| T |
7346 |
aataatcttcaaattacttgaaaaatggttggcttcatctc |
7386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 43 - 375
Target Start/End: Original strand, 11915295 - 11915635
Alignment:
| Q |
43 |
tgcaacgattggcaaaactatacaaaccatatgtatcttttaagtccatgtacgtaatgttatggccttcaattatttg-----aaatttatctacctag |
137 |
Q |
| |
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||||||||| ||| |||||||||| ||||||||| | ||||||||| ||||||| | ||||| |||| ||||| || |||||||||||||| |
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| T |
11915295 |
tgcaacgatcggctaaactatacagaccatatgtgttttttaagtctgtgtacgttactttatgacctttaattaattattagaaaatttatctacctga |
11915394 |
T |
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| Q |
138 |
gttaattttattca--atcatgaaccattattttatttt-catttcagctttgatgacacaaacactgaaattttacggatggaaacaaagggtcatctt |
234 |
Q |
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| T |
11915395 |
gctaattctcctcataatcatgaaccattggattatttttcatttcagctttgatgatacaaacactgaaattttaaggatggcaacaaagggtcatctt |
11915494 |
T |
|
| Q |
235 |
aagatggagaatgaagaatttaactttgatccaactagcattgattgggcagactatatgatgaacacacacattcctggtctcttcaagtatcaaaaga |
334 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||| || |
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| T |
11915495 |
aaggtggagaatgaagaatttaactttgatccaactagcattgactggatggactatatgatgaacacacacattcctggtctcatcaagtatcaaatga |
11915594 |
T |
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| Q |
335 |
aatagtcttcaaattacttcaaaaatggttggcttcatctc |
375 |
Q |
| |
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|||| |||||||||||||| ||||||||||||||||||||| |
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| T |
11915595 |
aataatcttcaaattacttgaaaaatggttggcttcatctc |
11915635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 171 - 312
Target Start/End: Original strand, 30894689 - 30894824
Alignment:
| Q |
171 |
ttttcatttcagctttgatgacacaaacactgaaattttacggatggaaacaaagggtcatcttaagatggagaatgaagaatttaactttgatccaact |
270 |
Q |
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|||| |||||||||| ||||||||||| || |||| |||| | | || ||||||| ||| ||||| |||||||||||||| |||||||| |||||| |
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| T |
30894689 |
tttttatttcagcttcgatgacacaaatacagaaaatttaagaagggtaacaaagagtc---ttaag---gagaatgaagaattaaactttgacccaact |
30894782 |
T |
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| Q |
271 |
agcattgattgggcagactatatgatgaacacacacattcct |
312 |
Q |
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| T |
30894783 |
agtattgattggacaaactacatgatgaatacacacattcct |
30894824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 312
Target Start/End: Original strand, 30898570 - 30898638
Alignment:
| Q |
244 |
aatgaagaatttaactttgatccaactagcattgattgggcagactatatgatgaacacacacattcct |
312 |
Q |
| |
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|||| |||||| ||||||| || |||| ||||||||| || ||||||||||||| |||||||||||| |
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| T |
30898570 |
aatggagaattagactttgaccccactaatattgattggacaaactatatgatgaatacacacattcct |
30898638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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