View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0896_low_14 (Length: 376)

Name: NF0896_low_14
Description: NF0896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0896_low_14
NF0896_low_14
[»] chr7 (17 HSPs)
chr7 (1-329)||(36222126-36222454)
chr7 (184-329)||(11279591-11279736)
chr7 (184-329)||(33313095-33313239)
chr7 (192-328)||(46846320-46846456)
chr7 (183-329)||(23759608-23759753)
chr7 (184-320)||(294969-295106)
chr7 (1-176)||(36218135-36218310)
chr7 (1-76)||(35938799-35938874)
chr7 (6-77)||(32727038-32727109)
chr7 (184-299)||(3861907-3862022)
chr7 (1-77)||(35957460-35957536)
chr7 (6-73)||(35981485-35981552)
chr7 (6-73)||(36002897-36002964)
chr7 (1-77)||(35976915-35976991)
chr7 (1-77)||(35998327-35998403)
chr7 (184-327)||(6967248-6967393)
chr7 (3-59)||(35951909-35951965)
[»] chr3 (4 HSPs)
chr3 (183-329)||(22626311-22626457)
chr3 (184-329)||(11138570-11138715)
chr3 (184-329)||(39563510-39563655)
chr3 (223-328)||(20536376-20536479)
[»] chr2 (6 HSPs)
chr2 (184-328)||(13710171-13710315)
chr2 (184-329)||(31528490-31528635)
chr2 (194-329)||(31626650-31626784)
chr2 (183-329)||(40018078-40018225)
chr2 (6-77)||(26329173-26329244)
chr2 (283-329)||(16294998-16295044)
[»] chr6 (6 HSPs)
chr6 (184-329)||(13017189-13017334)
chr6 (192-329)||(22221822-22221959)
chr6 (192-329)||(22247657-22247794)
chr6 (295-329)||(30978322-30978356)
chr6 (184-327)||(14790719-14790864)
chr6 (184-327)||(14795747-14795892)
[»] chr5 (11 HSPs)
chr5 (184-329)||(15532200-15532345)
chr5 (192-329)||(33575189-33575326)
chr5 (189-329)||(15542387-15542527)
chr5 (184-287)||(26711464-26711567)
chr5 (184-287)||(26981201-26981304)
chr5 (184-294)||(22159881-22159992)
chr5 (281-329)||(26712439-26712487)
chr5 (281-329)||(26982177-26982225)
chr5 (189-244)||(11988867-11988923)
chr5 (267-327)||(34405949-34406009)
chr5 (276-327)||(7650035-7650086)
[»] chr4 (2 HSPs)
chr4 (184-329)||(12172072-12172218)
chr4 (184-326)||(2541987-2542128)
[»] scaffold0440 (1 HSPs)
scaffold0440 (192-329)||(9963-10101)
[»] scaffold0264 (1 HSPs)
scaffold0264 (192-329)||(24193-24330)
[»] chr8 (1 HSPs)
chr8 (190-329)||(12575306-12575444)
[»] chr1 (5 HSPs)
chr1 (1-179)||(18125078-18125256)
chr1 (182-327)||(10765020-10765167)
chr1 (1-74)||(18117530-18117603)
chr1 (189-225)||(1936833-1936869)
chr1 (184-327)||(13493363-13493508)


Alignment Details
Target: chr7 (Bit Score: 293; Significance: 1e-164; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 36222126 - 36222454
Alignment:
Q  1 taaaattaagctatgatgaaatgtcatcctatttgaggcattgttttgcttatttttccttgtatcccaaagattattcattttctattgttgaaattac 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36222126 taaaattaagctatgatgaaatgccatcctatttgaggcattgttttgcttatttttccttgtatcccaaagattattcattttctattgttgaaattac 36222225  T
Q  101 ttgtctgtggatagctcttggattggttcaatccttgaatggaagtgaaaagctagaggatattgcaatagaatatattcgtgtgatggatatttggcaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  36222226 ttgtctgtggatagctcttggattggttcaatccttgaatggaagtgaaaagctagagaatattgcaatagaatatattcgtgtgatggatatttggcaa 36222325  T
Q  201 gtgaaccaaattcaatccaagtaataaaaattcgtttctacgaggattgtatttaaattctacgtagcaattttattattaaaaaggatgtataaaattt 300  Q
     |||||||||||||||  |||||||||||||||||| | ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  36222326 atgaaccaaattcaattgaagtaataaaaattcgttaccacgaggattgtatttaatttctacgtagcaatttcattattaaaaaggatgtataaaattt 36222425  T
Q  301 atattggtgccctaggcagttgagttgat 329  Q
    |||||||||||||||||||||||||||||    
T  36222426 atattggtgccctaggcagttgagttgat 36222454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 184 - 329
Target Start/End: Complemental strand, 11279736 - 11279591
Alignment:
Q  184 tgatggatatttggcaagtgaaccaaattcaatccaagtaataaaaattcgtttctacgaggattgtatttaaattctacgtagcaattttattattaaa 283  Q
    ||||| |||||||||||||||||||||||||||| |||||||||||||| ||||| || |||| | ||||||| |||||| ||||||||| |||||||||    
T  11279736 tgatgaatatttggcaagtgaaccaaattcaatcgaagtaataaaaatttgtttccacaaggactatatttaatttctacttagcaatttcattattaaa 11279637  T
Q  284 aaggatgtataaaatttatattggtgccctaggcagttgagttgat 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  11279636 aaggatgtataaaatttatattggtgccctaggcagttgagttgat 11279591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 184 - 329
Target Start/End: Complemental strand, 33313239 - 33313095
Alignment:
Q  184 tgatggatatttggcaagtgaaccaaattcaatccaagtaataaaaattcgtttctacgaggattgtatttaaattctacgtagcaattttattattaaa 283  Q
    |||| ||||||||  ||||||| ||||||||||| |||||||||||||||||||||||||||| |||||| || |||||| ||||||||| |||||||||    
T  33313239 tgatagatatttgagaagtgaaacaaattcaatcgaagtaataaaaattcgtttctacgaggactgtatt-aacttctacttagcaatttcattattaaa 33313141  T
Q  284 aaggatgtataaaatttatattggtgccctaggcagttgagttgat 329  Q
    |||||||| |||||||||||||||||||||||||||||||||||||    
T  33313140 aaggatgtgtaaaatttatattggtgccctaggcagttgagttgat 33313095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 192 - 328
Target Start/End: Original strand, 46846320 - 46846456
Alignment:
Q  192 atttggcaagtgaaccaaattcaatccaagtaataaaaattcgtttctacgaggattgtatttaaattctacgtagcaattttattattaaaaaggatgt 291  Q
    |||||||||||||| || |||||||| |||||||||||||  ||||| ||||||| ||||||||| |||||| ||||||||| |||||||||||||||||    
T  46846320 atttggcaagtgaatcagattcaatcgaagtaataaaaatatgtttccacgaggactgtatttaatttctacttagcaatttcattattaaaaaggatgt 46846419  T
Q  292 ataaaatttatattggtgccctaggcagttgagttga 328  Q
    |||||||||||||||||||||||||||||||||||||    
T  46846420 ataaaatttatattggtgccctaggcagttgagttga 46846456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 183 - 329
Target Start/End: Original strand, 23759608 - 23759753
Alignment:
Q  183 gtgatggatatttggcaagtgaaccaaattcaatccaagtaataaaaa-ttcgtttctacgaggattgtatttaaattctacgtagcaattttattatta 281  Q
    ||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||||||||| |||||| |||||| || ||| |||    
T  23759608 gtgatagatatttggcaagtgaaccaaattcaatcgaagtaataaaaagttcgtttctacgaggactgtatttaacttctacttagcaaattcatt-tta 23759706  T
Q  282 aaaaggatgtataaaatttatattggtgccctaggcagttgagttgat 329  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||    
T  23759707 aaaaggatgtat-aaatttatattggtgccctaggcagttgagttgat 23759753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 184 - 320
Target Start/End: Complemental strand, 295106 - 294969
Alignment:
Q  184 tgatggatatttggcaagtgaaccaaattcaatccaagtaataaaaa-ttcgtttctacgaggattgtatttaaattctacgtagcaattttattattaa 282  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| || || || ||||||| ||||||||| |||||| ||||||||| ||||||||    
T  295106 tgatggatatttggcaagtgaaccaaattcaatcgaagtaataaaaaatttgtgtccacgaggactgtatttaacttctacttagcaatttcattattaa 295007  T
Q  283 aaaggatgtataaaatttatattggtgccctaggcagt 320  Q
    ||||||||||  |||||||||||| ||||| |||||||    
T  295006 aaaggatgtaataaatttatattgatgcccgaggcagt 294969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 36218135 - 36218310
Alignment:
Q  1 taaaattaagctatgatgaaatgtcatcctatttgaggcattgttttgcttatttttccttgtatcccaaagattattcattttctattgttgaaattac 100  Q
    ||||||||||||||||| ||||| |||| ||| |||| || |||||||||| ||||||||||||||||||||| ||| | |||  ||| |||||||| ||    
T  36218135 taaaattaagctatgatcaaatgccatcatatctgagacaatgttttgcttgtttttccttgtatcccaaagactatacctttaatatcgttgaaatgac 36218234  T
Q  101 ttgtctgtggatagctcttggattggttcaatccttgaatggaagtgaaaagctagaggatattgcaatagaatat 176  Q
    |  | |||||||| | |||||||| |||||| || | ||||||||||||||||||||| ||||||| | |||||||    
T  36218235 tattttgtggataccccttggattagttcaacccataaatggaagtgaaaagctagagcatattgccagagaatat 36218310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 35938874 - 35938799
Alignment:
Q  1 taaaattaagctatgatgaaatgtcatcctatttgaggcattgttttgcttatttttccttgtatcccaaagatta 76  Q
    ||||||||||||||||| ||||| ||||||| |||||||| |||||||||||||||||| | ||||||||||||||    
T  35938874 taaaattaagctatgatcaaatgccatcctacttgaggcactgttttgcttatttttccctatatcccaaagatta 35938799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 6 - 77
Target Start/End: Complemental strand, 32727109 - 32727038
Alignment:
Q  6 ttaagctatgatgaaatgtcatcctatttgaggcattgttttgcttatttttccttgtatcccaaagattat 77  Q
    |||||||||||| ||||| |||||||||||||||| ||||||||||  |||||| | |||||||||||||||    
T  32727109 ttaagctatgatcaaatgccatcctatttgaggcaatgttttgctttcttttccctttatcccaaagattat 32727038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 184 - 299
Target Start/End: Original strand, 3861907 - 3862022
Alignment:
Q  184 tgatggatatttggcaagtgaaccaaattcaatccaagtaataaa-aattcgtttctacgaggattgtatttaaattctacgtagcaattttattattaa 282  Q
    |||| ||||||||||||||| || | | |||||| |||||||||| |||| || || |||||||||||  |||| |||||| ||||||||| |||||| |    
T  3861907 tgatagatatttggcaagtgtactagagtcaatcgaagtaataaataatttgtatccacgaggattgttattaacttctacttagcaatttcattatt-a 3862005  T
Q  283 aaaggatgtataaaatt 299  Q
    ||||||||||| |||||    
T  3862006 aaaggatgtattaaatt 3862022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 35957536 - 35957460
Alignment:
Q  1 taaaattaagctatgatgaaatgtcatcctatttgaggcattgttttgcttatttttccttgtatcccaaagattat 77  Q
    |||||||||| |||||| ||||| |||| ||| |||| || |||||||||||||||||| | |||||||||||||||    
T  35957536 taaaattaagttatgatcaaatgccatcatatctgagacaatgttttgcttatttttccctttatcccaaagattat 35957460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 6 - 73
Target Start/End: Complemental strand, 35981552 - 35981485
Alignment:
Q  6 ttaagctatgatgaaatgtcatcctatttgaggcattgttttgcttatttttccttgtatcccaaaga 73  Q
    ||||| |||||| ||||| |||||||||||||||| ||||||||||| |||||| | |||||||||||    
T  35981552 ttaagttatgatcaaatgccatcctatttgaggcagtgttttgcttacttttccctctatcccaaaga 35981485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 6 - 73
Target Start/End: Complemental strand, 36002964 - 36002897
Alignment:
Q  6 ttaagctatgatgaaatgtcatcctatttgaggcattgttttgcttatttttccttgtatcccaaaga 73  Q
    ||||| |||||| ||||| |||||||||||||||| ||||||||||| |||||| | |||||||||||    
T  36002964 ttaagttatgatcaaatgccatcctatttgaggcagtgttttgcttacttttccctctatcccaaaga 36002897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 35976991 - 35976915
Alignment:
Q  1 taaaattaagctatgatgaaatgtcatcctatttgaggcattgttttgcttatttttccttgtatcccaaagattat 77  Q
    ||||||||||||||||| ||||| |||| ||| |||| || ||||||| |||| ||||| | |||||||||||||||    
T  35976991 taaaattaagctatgatcaaatgccatcatatatgagacaatgttttgtttatatttccctttatcccaaagattat 35976915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 35998403 - 35998327
Alignment:
Q  1 taaaattaagctatgatgaaatgtcatcctatttgaggcattgttttgcttatttttccttgtatcccaaagattat 77  Q
    ||||||||||||||||| ||||| |||| ||| |||| || ||||||| |||| ||||| | |||||||||||||||    
T  35998403 taaaattaagctatgatcaaatgccatcatatatgagacaatgttttgtttatatttccctttatcccaaagattat 35998327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 184 - 327
Target Start/End: Complemental strand, 6967393 - 6967248
Alignment:
Q  184 tgatggatatttggcaagtgaaccaaattcaatccaagtaataaaaa--ttcgtttctacgaggattgtatttaaattctacgtagcaattttattatta 281  Q
    |||| ||||||||||||||| ||||||  | ||| ||||| ||| ||  ||||| || |||||||  ||  |||| ||||||   |||||||  |||| |    
T  6967393 tgatagatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatccacgaggaccgttgttaatttctactcggcaatttctttatca 6967294  T
Q  282 aaaaggatgtataaaatttatattggt-gccctaggcagttgagttg 327  Q
    ||||||||||||||| ||||||||| | |||||||||||||||||||    
T  6967293 aaaaggatgtataaa-tttatattgattgccctaggcagttgagttg 6967248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 35951965 - 35951909
Alignment:
Q  3 aaattaagctatgatgaaatgtcatcctatttgaggcattgttttgcttatttttcc 59  Q
    ||||||||||||||| |||||||||||||| | || |||||| |||| | |||||||    
T  35951965 aaattaagctatgatcaaatgtcatcctatctaagacattgtattgcctctttttcc 35951909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 100; Significance: 2e-49; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 183 - 329
Target Start/End: Original strand, 22626311 - 22626457
Alignment:
Q  183 gtgatggatatttggcaagtgaaccaaattcaatccaagtaataaaaa-ttcgtttctacgaggattgtatttaaattctacgtagcaattttattatta 281  Q
    ||||| ||||||||||||||||||||||||| ||| |||||||||||| |||||||| ||||||| ||||||||| |||||| ||||||||| |||||||    
T  22626311 gtgatagatatttggcaagtgaaccaaattcgatcgaagtaataaaaagttcgtttccacgaggactgtatttaacttctacttagcaatttcattatta 22626410  T
Q  282 aaaaggatgtataaaatttatattggtgccctaggcagttgagttgat 329  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||    
T  22626411 aaaaggatgtat-aaatttatattggtgccctaggcagttgagttgat 22626457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 184 - 329
Target Start/End: Original strand, 11138570 - 11138715
Alignment:
Q  184 tgatggatatttggcaagtgaaccaaattcaatccaagtaataaaaa-ttcgtttctacgaggattgtatttaaattctacgtagcaattttattattaa 282  Q
    |||| ||||||||||||||||||||||||| ||| |||||||||||| |||||||| ||||||| ||||||||| |||||| ||||||||| ||||||||    
T  11138570 tgatagatatttggcaagtgaaccaaattcgatcgaagtaataaaaagttcgtttccacgaggactgtatttaacttctacttagcaatttcattattaa 11138669  T
Q  283 aaaggatgtataaaatttatattggtgccctaggcagttgagttgat 329  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||    
T  11138670 aaaggatgtat-aaatttatattggtgccctaggcagttgagttgat 11138715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 184 - 329
Target Start/End: Original strand, 39563510 - 39563655
Alignment:
Q  184 tgatggatatttggcaagtgaaccaaattcaatccaagtaataaaaa-ttcgtttctacgaggattgtatttaaattctacgtagcaattttattattaa 282  Q
    |||| ||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||||| |||||| || |||||| ||||||||| ||||| ||    
T  39563510 tgatagatatttggcaagtgaaccaaattcaatcaaagtaataaaaaattcgtttccacgaggactgtatt-aacttctacttagcaatttcattataaa 39563608  T
Q  283 aaaggatgtataaaatttatattggtgccctaggcagttgagttgat 329  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||    
T  39563609 aaaggatgtgtaaaatttatattagtgccctaggcagttgagttgat 39563655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 328
Target Start/End: Original strand, 20536376 - 20536479
Alignment:
Q  223 aataaaaattcgtttctacgaggattgtatttaaattctacgtagcaattttattattaaaaaggatgtataaaatttatattggtgccctaggcagttg 322  Q
    |||||||  |||| || ||||||| ||||||||| |||||| ||| ||||| ||||||||||||||||||  |||||   |  |||||||||||||||||    
T  20536376 aataaaagatcgtatccacgaggactgtatttaacttctacttagaaatttcattattaaaaaggatgtagtaaatt--caagggtgccctaggcagttg 20536473  T
Q  323 agttga 328  Q
     |||||    
T  20536474 ggttga 20536479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 97; Significance: 1e-47; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 184 - 328
Target Start/End: Complemental strand, 13710315 - 13710171
Alignment:
Q  184 tgatggatatttggcaagtgaaccaaattcaatccaagtaataaaaattcgtttctacgaggattgtatttaaattctacgtagcaattttattattaaa 283  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| | ||||||||| |||||| ||||||||| |||||||||    
T  13710315 tgatagatatttggcaagtgaaccaaattcaatcgaagtaataaaaattcgtttttacgagaactgtatttaacttctacttagcaatttcattattaaa 13710216  T
Q  284 aaggatgtataaaatttatattggtgccctaggcagttgagttga 328  Q
    ||||||||||||||||||||||| ||||  ||| |||||||||||    
T  13710215 aaggatgtataaaatttatattgatgcctgaggaagttgagttga 13710171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 184 - 329
Target Start/End: Complemental strand, 31528635 - 31528490
Alignment:
Q  184 tgatggatatttggcaagtgaaccaaattcaatccaagtaataaaaa-ttcgtttctacgaggattgtatttaaattctacgtagcaattttattattaa 282  Q
    |||| ||||||||||||||||||||||||| ||| |||||||||||| || ||||| ||||||| ||||||||| |||||| ||||||||| ||||||||    
T  31528635 tgatagatatttggcaagtgaaccaaattcgatcgaagtaataaaaaatttgtttccacgaggactgtatttaacttctacttagcaatttcattattaa 31528536  T
Q  283 aaaggatgtataaaatttatattggtgccctaggcagttgagttgat 329  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||    
T  31528535 aaaggatgtat-aaatttatattggtgccctaggcagttgagttgat 31528490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 194 - 329
Target Start/End: Complemental strand, 31626784 - 31626650
Alignment:
Q  194 ttggcaagtgaaccaaattcaatccaagtaataaaaattcgtttctacgaggattgtatttaaattctacgtagcaattttattattaaaaaggatgtat 293  Q
    |||| ||||||||||||||||||| |||||||||||||||||||| | ||||| |||||| || |||||| ||||||||| ||||||||||||||||| |    
T  31626784 ttggtaagtgaaccaaattcaatcgaagtaataaaaattcgtttcaatgaggactgtatt-aacttctacttagcaatttcattattaaaaaggatgtgt 31626686  T
Q  294 aaaatttatattggtgccctaggcagttgagttgat 329  Q
    ||||||||||||||||||||||||||||||||||||    
T  31626685 aaaatttatattggtgccctaggcagttgagttgat 31626650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 183 - 329
Target Start/End: Complemental strand, 40018225 - 40018078
Alignment:
Q  183 gtgatggatatttggcaagtgaaccaaattcaatccaagtaataaaaa-ttcgtttctacgaggattgtatttaaattctacgtagcaattttattatta 281  Q
    |||||| |||||||||||||||||||||||||||| |||||||||||| || ||||  || |||| || |||||| ||| || | |||||||| ||||||    
T  40018225 gtgatgaatatttggcaagtgaaccaaattcaatcgaagtaataaaaaatttgttttcacaaggagtgcatttaacttcgacttggcaatttttttatta 40018126  T
Q  282 aaaaggatgtataaaatttatattggtgccctaggcagttgagttgat 329  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  40018125 aaaaggatgtataaaatttatattgatgccctaggcagttgagttgat 40018078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 6 - 77
Target Start/End: Original strand, 26329173 - 26329244
Alignment:
Q  6 ttaagctatgatgaaatgtcatcctatttgaggcattgttttgcttatttttccttgtatcccaaagattat 77  Q
    |||||||||||| ||||| ||||||||||||| ||||||||||||||||||||| | | |||||||||||||    
T  26329173 ttaagctatgatcaaatgccatcctatttgagacattgttttgcttatttttccctttttcccaaagattat 26329244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 283 - 329
Target Start/End: Complemental strand, 16295044 - 16294998
Alignment:
Q  283 aaaggatgtataaaatttatattggtgccctaggcagttgagttgat 329  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||    
T  16295044 aaaggatgtataaaatttatattgatgccctaggcagttgagttgat 16294998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 95; Significance: 2e-46; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 184 - 329
Target Start/End: Original strand, 13017189 - 13017334
Alignment:
Q  184 tgatggatatttggcaagtgaaccaaattcaatccaagtaataaaaa-ttcgtttctacgaggattgtatttaaattctacgtagcaattttattattaa 282  Q
    |||| ||||||||||||||||||||||||| ||| |||||||||||| |||||||| ||||||| | ||||||| |||||| ||||||||| ||||||||    
T  13017189 tgatagatatttggcaagtgaaccaaattcgatcgaagtaataaaaagttcgtttccacgaggactatatttaacttctacttagcaatttcattattaa 13017288  T
Q  283 aaaggatgtataaaatttatattggtgccctaggcagttgagttgat 329  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||    
T  13017289 aaaggatgtat-aaatttatattggtgccctaggcagttgagttgat 13017334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 192 - 329
Target Start/End: Complemental strand, 22221959 - 22221822
Alignment:
Q  192 atttggcaagtgaaccaaattcaatccaagtaataa-aaattcgtttctacgaggattgtatttaaattctacgtagcaattttattattaaaaaggatg 290  Q
    |||||||||||| ||||||  | ||| ||||| ||| ||||||||||| ||||||| | ||||||  ||||||  |||||||| ||||||||||||||||    
T  22221959 atttggcaagtgtaccaaaagctatcgaagtagtaataaattcgtttccacgaggactatatttagcttctactaagcaatttcattattaaaaaggatg 22221860  T
Q  291 tataaaatttatattggtgccctaggcagttgagttgat 329  Q
    ||| |||||  ||||||||||||||||||||||||||||    
T  22221859 tat-aaattattattggtgccctaggcagttgagttgat 22221822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 192 - 329
Target Start/End: Complemental strand, 22247794 - 22247657
Alignment:
Q  192 atttggcaagtgaaccaaattcaatccaagtaataa-aaattcgtttctacgaggattgtatttaaattctacgtagcaattttattattaaaaaggatg 290  Q
    |||||||||||| ||||||  | ||| ||||| ||| ||||||||||| ||||||| | ||||||  ||||||  |||||||| ||||||||||||||||    
T  22247794 atttggcaagtgtaccaaaagctatcgaagtagtaataaattcgtttccacgaggactatatttagcttctactaagcaatttcattattaaaaaggatg 22247695  T
Q  291 tataaaatttatattggtgccctaggcagttgagttgat 329  Q
    ||| |||||  ||||||||||||||||||||||||||||    
T  22247694 tat-aaattattattggtgccctaggcagttgagttgat 22247657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 295 - 329
Target Start/End: Original strand, 30978322 - 30978356
Alignment:
Q  295 aaatttatattggtgccctaggcagttgagttgat 329  Q
    |||||||||||||||||||||||||||||||||||    
T  30978322 aaatttatattggtgccctaggcagttgagttgat 30978356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 184 - 327
Target Start/End: Complemental strand, 14790864 - 14790719
Alignment:
Q  184 tgatggatatttggcaagtgaaccaaattcaatccaagtaataaaaa--ttcgtttctacgaggattgtatttaaattctacgtagcaattttattatta 281  Q
    |||| ||||||||||||||| ||||||  | ||| ||||| ||| ||  ||||| || |||||||  ||  |||| ||||||   |||||||  |||| |    
T  14790864 tgatagatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatccacgaggaccgttgttaatttctactcggcaatttctttatca 14790765  T
Q  282 aaaaggatgtataaaatttatattggt-gccctaggcagttgagttg 327  Q
    ||||||||||||||| ||||||||| | |||||||||||||||||||    
T  14790764 aaaaggatgtataaa-tttatattgattgccctaggcagttgagttg 14790719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 184 - 327
Target Start/End: Complemental strand, 14795892 - 14795747
Alignment:
Q  184 tgatggatatttggcaagtgaaccaaattcaatccaagtaataaaaa--ttcgtttctacgaggattgtatttaaattctacgtagcaattttattatta 281  Q
    |||| ||||||||||||||| ||||||  | ||| ||||| ||| ||  |||||  |||||||||  ||  |||| ||||||   |||||||  |||| |    
T  14795892 tgatagatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtacctacgaggaccgttgttaatttctactcggcaatttctttatca 14795793  T
Q  282 aaaaggatgtataaaatttatattggt-gccctaggcagttgagttg 327  Q
    ||||||||||||||| ||||||||| | |||||||||||||||||||    
T  14795792 aaaaggatgtataaa-tttatattgattgccctaggcagttgagttg 14795747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 95; Significance: 2e-46; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 184 - 329
Target Start/End: Original strand, 15532200 - 15532345
Alignment:
Q  184 tgatggatatttggcaagtgaaccaaattcaatccaagtaataaaa-attcgtttctacgaggattgtatttaaattctacgtagcaattttattattaa 282  Q
    |||| ||||||||||| ||||||||||||| ||| ||||||||||| ||||||||| ||||||| ||||||||| |||||| ||||||||| ||||||||    
T  15532200 tgatagatatttggcatgtgaaccaaattcgatcgaagtaataaaaaattcgtttccacgaggactgtatttaacttctacttagcaatttcattattaa 15532299  T
Q  283 aaaggatgtataaaatttatattggtgccctaggcagttgagttgat 329  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||    
T  15532300 aaaggatgtat-aaatttatattggtgccctaggcagttgagttgat 15532345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 192 - 329
Target Start/End: Complemental strand, 33575326 - 33575189
Alignment:
Q  192 atttggcaagtgaaccaaattcaatccaagtaataaaaa-ttcgtttctacgaggattgtatttaaattctacgtagcaattttattattaaaaaggatg 290  Q
    |||||||||||||||||||||||||| |||||||||||| |||||||  ||||||| ||||||||| |||||  ||||||||||||||||||||||||||    
T  33575326 atttggcaagtgaaccaaattcaatcgaagtaataaaaaattcgttttcacgaggactgtatttaacttctatttagcaattttattattaaaaaggatg 33575227  T
Q  291 tataaaatttatattggtgccctaggcagttgagttgat 329  Q
    ||| |||||||||||||||||||||||||||||||||||    
T  33575226 tat-aaatttatattggtgccctaggcagttgagttgat 33575189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 189 - 329
Target Start/End: Original strand, 15542387 - 15542527
Alignment:
Q  189 gatatttggcaagtgaaccaaattcaatccaagtaataaaa-attcgtttctacgaggattgtatttaaattctacgtagcaattttattattaaaaagg 287  Q
    ||||||||||||||||||||||||| ||| ||||||||||| ||||||||| ||||||| ||||||||| |||||| || |||||| |||||||||||||    
T  15542387 gatatttggcaagtgaaccaaattcgatcgaagtaataaaaaattcgtttccacgaggactgtatttaacttctacttaacaatttcattattaaaaagg 15542486  T
Q  288 atgtataaaatttatattggtgccctaggcagttgagttgat 329  Q
    |||||| |||||||||||||||||||||||||||||||||||    
T  15542487 atgtat-aaatttatattggtgccctaggcagttgagttgat 15542527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 184 - 287
Target Start/End: Original strand, 26711464 - 26711567
Alignment:
Q  184 tgatggatatttggcaagtgaaccaaattcaatccaagtaat-aaaaattcgtttctacgaggattgtatttaaattctacgtagcaattttattattaa 282  Q
    |||| ||||||||||||||||||||||||||||  ||||||| ||||||||||||| ||||||| |||| |||| |||||| ||||||||| ||||| ||    
T  26711464 tgatagatatttggcaagtgaaccaaattcaattgaagtaataaaaaattcgtttccacgaggactgta-ttaacttctacttagcaatttcattatcaa 26711562  T
Q  283 aaagg 287  Q
    |||||    
T  26711563 aaagg 26711567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 184 - 287
Target Start/End: Original strand, 26981201 - 26981304
Alignment:
Q  184 tgatggatatttggcaagtgaaccaaattcaatccaagtaat-aaaaattcgtttctacgaggattgtatttaaattctacgtagcaattttattattaa 282  Q
    |||| ||||||||||||||||||||||||||||  ||||||| ||||||||||||| ||||||| |||| |||| |||||| ||||||||| ||||| ||    
T  26981201 tgatagatatttggcaagtgaaccaaattcaattgaagtaataaaaaattcgtttccacgaggactgta-ttaacttctacttagcaatttcattatcaa 26981299  T
Q  283 aaagg 287  Q
    |||||    
T  26981300 aaagg 26981304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 184 - 294
Target Start/End: Complemental strand, 22159992 - 22159881
Alignment:
Q  184 tgatggatatttggcaagtgaaccaaattcaatccaagtaataaaaa-ttcgtttctacgaggattgtatttaaattctacgtagcaattttattattaa 282  Q
    |||| |||||||| |||||| ||||||||| ||| |||||||||||| || ||||| ||||||| ||||||||| |||||| |||||||||  || | ||    
T  22159992 tgatagatatttgacaagtgtaccaaattcgatcgaagtaataaaaaatttgtttccacgaggactgtatttaacttctacttagcaatttctttgtcaa 22159893  T
Q  283 aaaggatgtata 294  Q
    ||||||||||||    
T  22159892 aaaggatgtata 22159881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 281 - 329
Target Start/End: Original strand, 26712439 - 26712487
Alignment:
Q  281 aaaaaggatgtataaaatttatattggtgccctaggcagttgagttgat 329  Q
    ||||||||||| ||||||||||||| ||||||||| |||||||||||||    
T  26712439 aaaaaggatgtgtaaaatttatattagtgccctagacagttgagttgat 26712487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 281 - 329
Target Start/End: Original strand, 26982177 - 26982225
Alignment:
Q  281 aaaaaggatgtataaaatttatattggtgccctaggcagttgagttgat 329  Q
    ||||||||||| ||||||||||||| ||||||||| |||||||||||||    
T  26982177 aaaaaggatgtgtaaaatttatattagtgccctagacagttgagttgat 26982225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 244
Target Start/End: Original strand, 11988867 - 11988923
Alignment:
Q  189 gatatttggcaagtgaaccaaattcaatccaagtaataaa-aattcgtttctacgag 244  Q
    |||||||| |||||||| ||||||||||| |||||||||| |||||||||| |||||    
T  11988867 gatatttgacaagtgaatcaaattcaatcgaagtaataaataattcgtttccacgag 11988923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 327
Target Start/End: Complemental strand, 34406009 - 34405949
Alignment:
Q  267 gcaattttattattaaaaaggatgtataaaatttatattggt-gccctaggcagttgagttg 327  Q
    |||||||  |||| |||||||||||||||| ||||||||| | |||||||||||||||||||    
T  34406009 gcaatttctttatcaaaaaggatgtataaa-tttatattgattgccctaggcagttgagttg 34405949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 327
Target Start/End: Original strand, 7650035 - 7650086
Alignment:
Q  276 ttattaaaaaggatgtataaaatttatattggt-gccctaggcagttgagttg 327  Q
    |||| |||||||||||||||| ||||||||| | |||||||||||||||||||    
T  7650035 ttatcaaaaaggatgtataaa-tttatattgattgccctaggcagttgagttg 7650086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 93; Significance: 3e-45; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 184 - 329
Target Start/End: Complemental strand, 12172218 - 12172072
Alignment:
Q  184 tgatggatatttggcaagtgaaccaaattcaatccaagtaataaaaat--tcgtttctacgaggattgtatttaaattctacgtagcaattttattatta 281  Q
    |||| ||||||||||||||||||||||||| ||| ||||||||||||   ||||||| ||||||| ||||||||| |||||| ||||||||| |||||||    
T  12172218 tgatagatatttggcaagtgaaccaaattcgatcgaagtaataaaaaagatcgtttccacgaggactgtatttaacttctacttagcaatttcattatta 12172119  T
Q  282 aaaaggatgtataaaatttatattggtgccctaggcagttgagttgat 329  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||    
T  12172118 aaaaggatgtat-aaatttatattggtgccctaggcagttgagttgat 12172072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 184 - 326
Target Start/End: Complemental strand, 2542128 - 2541987
Alignment:
Q  184 tgatggatatttggcaagtgaaccaaattcaatccaagtaataaa-aattcgtttctacgaggattgtatttaaattctacgtagcaattttattattaa 282  Q
    |||| ||||||||||||||| |||||| |||||| |||||||||| ||||||| || ||||||| ||||||||| ||||||  |||||||| ||||||||    
T  2542128 tgatagatatttggcaagtgtaccaaagtcaatcgaagtaataaataattcgtatccacgaggactgtatttaacttctactgagcaatttcattattaa 2542029  T
Q  283 aaaggatgtataaaatttatattggtgccctaggcagttgagtt 326  Q
    ||||||||||| |||||   | ||||||||||||||||||||||    
T  2542028 aaaggatgtattaaatt--caatggtgccctaggcagttgagtt 2541987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0440 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: scaffold0440
Description:

Target: scaffold0440; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 192 - 329
Target Start/End: Complemental strand, 10101 - 9963
Alignment:
Q  192 atttggcaagtgaaccaaattcaatccaagtaataaaa--attcgtttctacgaggattgtatttaaattctacgtagcaattttattattaaaaaggat 289  Q
    |||||||||||||| ||||||| ||| |||||||||||  |||||||||  |  ||| ||||||||| |||||| ||||||||| |||||||||||||||    
T  10101 atttggcaagtgaatcaaattcgatcgaagtaataaaagaattcgtttcctcagggactgtatttaacttctacttagcaatttcattattaaaaaggat 10002  T
Q  290 gtataaaatttatattggtgccctaggcagttgagttgat 329  Q
    |||| |||||||||||||| ||||||||||||||||||||    
T  10001 gtat-aaatttatattggtcccctaggcagttgagttgat 9963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 192 - 329
Target Start/End: Original strand, 24193 - 24330
Alignment:
Q  192 atttggcaagtgaaccaaattcaatccaagtaataa-aaattcgtttctacgaggattgtatttaaattctacgtagcaattttattattaaaaaggatg 290  Q
    |||||||||||| ||||||  | ||| ||||| ||| ||||| ||||| ||||||| ||||||||| ||||||  | |||||| ||||||||||||||||    
T  24193 atttggcaagtgtaccaaaagctatcgaagtagtaataaatttgtttccacgaggactgtatttaacttctactcaacaatttcattattaaaaaggatg 24292  T
Q  291 tataaaatttatattggtgccctaggcagttgagttgat 329  Q
    ||| |||||  ||||||||||||||||||||||||||||    
T  24293 tat-aaattattattggtgccctaggcagttgagttgat 24330  T

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Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 190 - 329
Target Start/End: Original strand, 12575306 - 12575444
Alignment:
Q  190 atatttggcaagtgaaccaaattcaatccaagtaataaa-aattcgtttctacgaggattgtatttaaattctacgtagcaattttattattaaaaagga 288  Q
    |||||||||||||| ||||||||||||| |||||||||| ||||||| || ||||||| |||  |||| ||||||  | ||| || ||||||||||||||    
T  12575306 atatttggcaagtgtaccaaattcaatcgaagtaataaataattcgtatccacgaggactgttgttaacttctactcaacaagttcattattaaaaagga 12575405  T
Q  289 tgtataaaatttatattggtgccctaggcagttgagttgat 329  Q
    ||||| |||||   | |||||||||||||||||||||||||    
T  12575406 tgtattaaatt--caatggtgccctaggcagttgagttgat 12575444  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 18125256 - 18125078
Alignment:
Q  1 taaaattaagctatgatgaaatgtcatcctatttgaggcattgttttgcttatttttccttgtatcccaaagattattcattttctattgttgaaattac 100  Q
    ||||||| ||||||||  ||||| |||||||||| ||||| || ||||||||||| ||| | ||||| ||||||  | | || | || | | || ||||     
T  18125256 taaaattgagctatgaccaaatgccatcctatttaaggcaatgctttgcttatttctccctttatcctaaagatattactttctgtagtttggatattat 18125157  T
Q  101 ttgtctgtggatagctcttggattggttcaatccttgaatggaagtgaaaagctagaggatattgcaatagaatatatt 179  Q
    |  ||| ||| |||| |||||||| |||||| ||  ||| ||||||||||| |||||||||||||||| ||||||||||    
T  18125156 tgctctttgggtagcccttggattagttcaaccccggaacggaagtgaaaaactagaggatattgcaagagaatatatt 18125078  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 182 - 327
Target Start/End: Complemental strand, 10765167 - 10765020
Alignment:
Q  182 tgtgatggatatttggcaagtgaaccaaattcaatccaagtaataaaaa--ttcgtttctacgaggattgtatttaaattctacgtagcaattttattat 279  Q
    |||||| ||||||||||||||| ||||||  | ||| ||||| ||| ||  ||||| || |||||||  ||  |||| ||||||   |||||||  ||||    
T  10765167 tgtgatagatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatccacgaggaccgttgttaatttctactcggcaatttctttat 10765068  T
Q  280 taaaaaggatgtataaaatttatattggt-gccctaggcagttgagttg 327  Q
     |||||||||||||||| ||||||||| | |||||||||||||||||||    
T  10765067 caaaaaggatgtataaa-tttatattgattgccctaggcagttgagttg 10765020  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 18117603 - 18117530
Alignment:
Q  1 taaaattaagctatgatgaaatgtcatcctatttgaggcattgttttgcttatttttccttgtatcccaaagat 74  Q
    ||||||||||||||||| ||||| |||||||||| ||||| || ||||||||  || |  ||||||||||||||    
T  18117603 taaaattaagctatgataaaatgccatcctatttaaggcactgctttgcttacattgctatgtatcccaaagat 18117530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 225
Target Start/End: Complemental strand, 1936869 - 1936833
Alignment:
Q  189 gatatttggcaagtgaaccaaattcaatccaagtaat 225  Q
    ||||||||||||||||||||||||||||| |||||||    
T  1936869 gatatttggcaagtgaaccaaattcaatcgaagtaat 1936833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 184 - 327
Target Start/End: Complemental strand, 13493508 - 13493363
Alignment:
Q  184 tgatggatatttggcaagtgaaccaaattcaatccaagtaataaaaa--ttcgtttctacgaggattgtatttaaattctacgtagcaattttattatta 281  Q
    |||| ||||||||||||||| ||||||  | ||| ||||| ||| ||  ||||| || |||||||  ||  |||| ||||||   |||||||  |||| |    
T  13493508 tgatagatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatccacgaggaccgttgttaatttctactcggcaatttctttatca 13493409  T
Q  282 aaaaggatgtataaaatttatattggt-gccctaggcagttgagttg 327  Q
    ||||||||||||||| ||||||||| | |||||||||||||||||||    
T  13493408 aaaaggatgtataaa-tttatattgattgccctaggcagttgagttg 13493363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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