View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0896_low_15 (Length: 371)
Name: NF0896_low_15
Description: NF0896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0896_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 4 - 361
Target Start/End: Complemental strand, 7432550 - 7432172
Alignment:
| Q |
4 |
acacatttctcacaactcatcaaccataatgaccctgtttcattttattcatctctctaatga---atctcattctgctacctctgaagaccaagacatg |
100 |
Q |
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| T |
7432550 |
acacatttctcaaaactcatcaaccataataaccctgtttcattttattcatctctctaatgatgaatctcattctgctacctctgaagaccaagacatg |
7432451 |
T |
|
| Q |
101 |
gacccaatggtatagcttctctttcttcactgcaatggttattttatttcagctataggctgttcactgtactgtttttgttcttccactacagcaatac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7432450 |
gacccaatggtatagcttctctttcttcactgcaatggttattttatttcagctataggctgttcactgtactgtttttgttcttccactacagcaatac |
7432351 |
T |
|
| Q |
201 |
ttggagaataggctaaagcatcttgctcttgaaaaagcaaaagggaagta------------------ccatgtcactatgtctactgacaatacattaa |
282 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
7432350 |
ttggagaataggctaaagcatcttgctcttgaaaaagcaaaagggaagtacctataccctcacaagttccatgtcactatgtctactgacaatacattaa |
7432251 |
T |
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| Q |
283 |
ggaatatgaaggtttaaacaatggacaacaccttgaagacgtttctgtgtctttgactggtaggcattaattatctctg |
361 |
Q |
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| T |
7432250 |
ggaatatgaaggtttaaacaatggacaacaccttgaagacgtttctgtgtctttgactggtaggcattaattatctctg |
7432172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 271 - 344
Target Start/End: Original strand, 15836665 - 15836738
Alignment:
| Q |
271 |
acaatacattaaggaatatgaaggtttaaacaatggacaacaccttgaagacgtttctgtgtctttgactggta |
344 |
Q |
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|||||| || ||||||||||||||||||| |||| ||||| ||||| || |||||||||||||||||||||| |
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| T |
15836665 |
acaatatatcaaggaatatgaaggtttaagtgatgggcaacatcttgacgatgtttctgtgtctttgactggta |
15836738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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