View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0896_low_16 (Length: 367)

Name: NF0896_low_16
Description: NF0896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0896_low_16
NF0896_low_16
[»] chr2 (4 HSPs)
chr2 (1-238)||(40894564-40894802)
chr2 (100-237)||(31621831-31621970)
chr2 (100-236)||(36668882-36669020)
chr2 (323-359)||(40894443-40894479)
[»] chr3 (2 HSPs)
chr3 (1-238)||(37464683-37464919)
chr3 (100-183)||(19801947-19802030)
[»] scaffold0115 (2 HSPs)
scaffold0115 (100-237)||(4532-4671)
scaffold0115 (100-237)||(12272-12411)
[»] chr5 (1 HSPs)
chr5 (101-237)||(16728009-16728147)
[»] chr1 (4 HSPs)
chr1 (103-237)||(49917586-49917722)
chr1 (100-238)||(26529703-26529843)
chr1 (100-237)||(36574158-36574297)
chr1 (100-183)||(17332769-17332851)
[»] chr4 (2 HSPs)
chr4 (100-237)||(8479848-8479989)
chr4 (100-177)||(31409538-31409614)
[»] chr7 (1 HSPs)
chr7 (1-60)||(42537846-42537905)


Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 40894802 - 40894564
Alignment:
Q  1 gttaactgtgctaatctggccgctagacttgccacttcagttgctgtattggccttccacgtaggcaaatgactaaattgatg-atgtccatgtaggcga 99  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  40894802 gttaactatgctaatctggccgctagacttgccacttcagttgctgtattggccttccacgtaggcaaatgactaaattgatggatgtccatgtaggcga 40894703  T
Q  100 gagggaccaaaatgaccataattatgttactaccttcatcttctccaacacctctaattccttcttcttctccaacacaactcaaactcatattctccaa 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  40894702 gagggaccaaaatgaccataattatgttactaccttcatcttctccaacacctctaatttcttcttcttctccaaaacaactcaaactcatattctccaa 40894603  T
Q  200 catctttacccataatttttcatatttatacagataact 238  Q
     |||| |||||| ||||||||||||||||||||||||||    
T  40894602 tatctctacccagaatttttcatatttatacagataact 40894564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 100 - 237
Target Start/End: Complemental strand, 31621970 - 31621831
Alignment:
Q  100 gagggaccaaaatgaccataattatgttactaccttcatcttctccaacacctctaattccttcttcttctccaacacaactc--aaactcatattctcc 197  Q
    |||||||||||||||||| |||||||||  |  ||||||||||||||||||||| |||| |||||||||||||||||||||||  |||| ||| || |||    
T  31621970 gagggaccaaaatgaccagaattatgttcttgtcttcatcttctccaacacctccaattacttcttcttctccaacacaactcataaacacattttgtcc 31621871  T
Q  198 aacatctttacccataatttttcatatttatacagataac 237  Q
    ||||||| | |||||||||||||||||| ||||| |||||    
T  31621870 aacatctctgcccataatttttcatattcatacaaataac 31621831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 100 - 236
Target Start/End: Complemental strand, 36669020 - 36668882
Alignment:
Q  100 gagggaccaaaatgaccataattatgttactaccttcatcttctccaacacctctaattccttcttcttctccaacacaactc--aaactcatattctcc 197  Q
    |||||||||||||||||| |||||||||  |  ||||||||||||||||||||| |||| |||||||||||||||||||||||  ||||||||  | |||    
T  36669020 gagggaccaaaatgaccagaattatgttcttgtcttcatcttctccaacacctccaattacttcttcttctccaacacaactcataaactcattctgtcc 36668921  T
Q  198 aacatctttacccataatttttcatatttatacagataa 236  Q
    ||||| | | |||||||||||||||||| ||||| ||||    
T  36668920 aacatttctgcccataatttttcatattcatacaaataa 36668882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 323 - 359
Target Start/End: Complemental strand, 40894479 - 40894443
Alignment:
Q  323 tgaattgatttatcatctttatttacatcttcatctc 359  Q
    |||||||||||||||||||||||| ||||||||||||    
T  40894479 tgaattgatttatcatctttattttcatcttcatctc 40894443  T

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Target: chr3 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 37464919 - 37464683
Alignment:
Q  1 gttaactgtgctaatctggccgctagacttgccacttcagttgctgtattggccttccacgtaggcaaatgactaaattgatg-atgtccatgtaggcga 99  Q
    ||||| |||| | ||||||| |||||||||||||||||||||||||||||||| ||||||  | ||||| ||||||||||||| ||||||||||||||||    
T  37464919 gttaattgtgttgatctggctgctagacttgccacttcagttgctgtattggcattccacacatgcaaa-gactaaattgatggatgtccatgtaggcga 37464821  T
Q  100 gagggaccaaaatgaccataattatgttactaccttcatcttctccaacacctctaattccttcttcttctccaacacaactc--aaactcatattctcc 197  Q
    ||||||||||| |||||||||||||||||||  |||||||||||||||||| ||| ||||||||   ||||||||||||||||  |||||||||||||||    
T  37464820 gagggaccaaactgaccataattatgttactgtcttcatcttctccaacacatctcattccttc---ttctccaacacaactcataaactcatattctcc 37464724  T
Q  198 aacatctttacccataatttttcatatttatacagataact 238  Q
    ||||||| |||||| ||||||||||||| ||| ||||||||    
T  37464723 aacatctctacccagaatttttcatattcatagagataact 37464683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 100 - 183
Target Start/End: Original strand, 19801947 - 19802030
Alignment:
Q  100 gagggaccaaaatgaccataattatgttactaccttcatcttctccaacacctctaattccttcttcttctccaacacaactca 183  Q
    |||||||||||||||||| ||||||||| || |||||| ||||| |||  || | ||||||||| ||||||||| ||| |||||    
T  19801947 gagggaccaaaatgaccacaattatgtttctgccttcaacttcttcaatgcccccaattccttcatcttctccatcactactca 19802030  T

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Target: scaffold0115 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 100 - 237
Target Start/End: Original strand, 4532 - 4671
Alignment:
Q  100 gagggaccaaaatgaccataattatgttactaccttcatcttctccaacacctctaattccttcttcttctccaacacaact--caaactcatattctcc 197  Q
    ||||||||||||||| || |||||||||  | |||||||||||||||| || || |||||||||||||||||||||||||||  ||||||||| || |||    
T  4532 gagggaccaaaatgatcagaattatgttcatgccttcatcttctccaaaacttccaattccttcttcttctccaacacaactaacaaactcattttgtcc 4631  T
Q  198 aacatctttacccataatttttcatatttatacagataac 237  Q
    ||||||||| ||||||| |||||||||| ||||| |||||    
T  4632 aacatctttgcccataaattttcatattcatacaaataac 4671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 100 - 237
Target Start/End: Original strand, 12272 - 12411
Alignment:
Q  100 gagggaccaaaatgaccataattatgttactaccttcatcttctccaacacctctaattccttcttcttctccaacacaact--caaactcatattctcc 197  Q
    ||||||||||||||| || |||||||||  | |||||||||||||||| || || |||||||||||||||||||||||||||  ||||||||| || |||    
T  12272 gagggaccaaaatgatcagaattatgttcatgccttcatcttctccaaaacttccaattccttcttcttctccaacacaactaacaaactcattttgtcc 12371  T
Q  198 aacatctttacccataatttttcatatttatacagataac 237  Q
    ||||||||| ||||||| |||||||||| ||||| |||||    
T  12372 aacatctttgcccataaattttcatattcatacaaataac 12411  T

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Target: chr5 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 101 - 237
Target Start/End: Original strand, 16728009 - 16728147
Alignment:
Q  101 agggaccaaaatgaccataattatgttactaccttcatcttctccaacacctctaattccttcttcttctccaacacaactc--aaactcatattctcca 198  Q
    ||||||||||||||||| |||||||||  |  ||||||||||||||||||||| |||| |||||||||||||||||||||||  |||||||| || ||||    
T  16728009 agggaccaaaatgaccagaattatgttcttgtcttcatcttctccaacacctccaattacttcttcttctccaacacaactcataaactcattttgtcca 16728108  T
Q  199 acatctttacccataatttttcatatttatacagataac 237  Q
    |||||| | || | ||||||||||||| ||||| |||||    
T  16728109 acatctctgcctagaatttttcatattcatacaaataac 16728147  T

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Target: chr1 (Bit Score: 66; Significance: 4e-29; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 103 - 237
Target Start/End: Original strand, 49917586 - 49917722
Alignment:
Q  103 ggaccaaaatgaccataattatgttactaccttcatcttctccaacacctctaattccttcttcttctccaacacaactc--aaactcatattctccaac 200  Q
    ||||||||||||||| |||||||||  | ||| ||||||||| |||||||| ||||||||||||||||||||||||||||  |||||||| || ||||||    
T  49917586 ggaccaaaatgaccagaattatgttcttgcctccatcttctcaaacacctccaattccttcttcttctccaacacaactcataaactcattttatccaac 49917685  T
Q  201 atctttacccataatttttcatatttatacagataac 237  Q
    |||| | |||| || |||||||||| ||||| |||||    
T  49917686 atctctgcccagaaattttcatattcatacaaataac 49917722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 100 - 238
Target Start/End: Original strand, 26529703 - 26529843
Alignment:
Q  100 gagggaccaaaatgaccataattatgttactaccttcatcttctccaacacctctaattccttcttcttctccaacacaactc--aaactcatattctcc 197  Q
    |||||||||||||||||| |||||||||  |  ||||||| ||||||||||||| |||| ||||||||||||||| |||||||  ||||||||  | |||    
T  26529703 gagggaccaaaatgaccagaattatgttcttgtcttcatcatctccaacacctccaattacttcttcttctccaaaacaactcataaactcattctgtcc 26529802  T
Q  198 aacatctttacccataatttttcatatttatacagataact 238  Q
    ||||||| |  ||||||||||||||||| ||||| ||||||    
T  26529803 aacatctatgtccataatttttcatattcatacaaataact 26529843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 100 - 237
Target Start/End: Original strand, 36574158 - 36574297
Alignment:
Q  100 gagggaccaaaatgaccataattatgttactaccttcatcttctccaacacctctaattccttcttcttctccaacacaactc--aaactcatattctcc 197  Q
    |||||||||||||||||| |||||||||  |   |||||||||||||||||||| |||| |||| ||||||||||||||||||  |||||||| || | |    
T  36574158 gagggaccaaaatgaccaaaattatgttcttgttttcatcttctccaacacctccaattacttcatcttctccaacacaactcataaactcattttgtac 36574257  T
Q  198 aacatctttacccataatttttcatatttatacagataac 237  Q
    ||||||| | |||| ||||||||||||| ||||| |||||    
T  36574258 aacatctctgcccagaatttttcatattcatacaaataac 36574297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 100 - 183
Target Start/End: Complemental strand, 17332851 - 17332769
Alignment:
Q  100 gagggaccaaaatgaccataattatgttactaccttcatcttctccaacacctctaattccttcttcttctccaacacaactca 183  Q
    ||||||||||||| |||| |||||| ||||  ||||| |||||||||||||||| |||||  |  ||||||||||||| |||||    
T  17332851 gagggaccaaaattaccacaattat-ttacggccttcttcttctccaacacctccaattctattatcttctccaacactactca 17332769  T

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Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 100 - 237
Target Start/End: Original strand, 8479848 - 8479989
Alignment:
Q  100 gagggaccaaaatgaccataattatgttactaccttcatcttctccaacacctctaattccttcttcttctccaacacaactc--aaactca-tattctc 196  Q
    ||||||||||||||| || ||||||||| || ||||||||||||||||||| || ||||||||||||||||||||||||||||  ||||||| | || ||    
T  8479848 gagggaccaaaatgatcagaattatgttcctgccttcatcttctccaacacttccaattccttcttcttctccaacacaactcagaaactcatttttgtc 8479947  T
Q  197 caacatctttaccc-ataatttttcatatttatacagataac 237  Q
    |||||||||| ||| | || |||||||||| ||||| |||||    
T  8479948 caacatctttgcccaaaaaattttcatattcatacaaataac 8479989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 100 - 177
Target Start/End: Original strand, 31409538 - 31409614
Alignment:
Q  100 gagggaccaaaatgaccataattatgttactaccttcatcttctccaacacctctaattccttcttcttctccaacac 177  Q
    |||||| ||||||||||| ||||||||| || |||||||||||| |||  |||| ||||||||| |||||||||||||    
T  31409538 gagggatcaaaatgaccacaattatgtt-ctgccttcatcttcttcaatgcctccaattccttcatcttctccaacac 31409614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 42537846 - 42537905
Alignment:
Q  1 gttaactgtgctaatctggccgctagacttgccacttcagttgctgtattggccttccac 60  Q
    ||||| |||| | ||||||| ||||||||||||||||||| |||||||||||| ||||||    
T  42537846 gttaattgtgttgatctggctgctagacttgccacttcagctgctgtattggcattccac 42537905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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