View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0896_low_18 (Length: 350)
Name: NF0896_low_18
Description: NF0896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0896_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 47364726 - 47365050
Alignment:
| Q |
1 |
cagacaagtctaatgtctaagtttgctcctaaccattacttaaatcagttaaatgtctatttgcaaaccaaattctaagttgaaaccttctannnnnnnc |
100 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
47364726 |
cagacaagtctaatgtctaagtttgcacctaaccattacttaaatcagttaaatgtctatttgcaaaccaaattctaagttgaaaccttctatttttttc |
47364825 |
T |
|
| Q |
101 |
acatgaagatatttgtaaatttgtaattcatgcagaaaaagagaagactccaacgagcaatt-ttcagataacagaaactgaagttagtctgtgtgatat |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
47364826 |
acatgaagatatttgtaaatttgtaattcatgcagaaaaagagaagactccaacgagcaattcttcagataacagaaactgaagttagtctgtgtgatat |
47364925 |
T |
|
| Q |
200 |
ttctaaatggccaagatgggttggtttagcatggtaaagaagctctttacac--gacacacattccactcaagagaaggtaggtgtaatgtttatttgac |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
47364926 |
ttctaaatggccaagatgggttggtttagcatggtaaagaagctctttacacgggacatacattccactcaagagaaggtaggtgtaatgtttatttgac |
47365025 |
T |
|
| Q |
298 |
taagtgtttattttggcaatgagtt |
322 |
Q |
| |
|
||||||||||||||||||||||||| |
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| T |
47365026 |
taagtgtttattttggcaatgagtt |
47365050 |
T |
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