View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0896_low_22 (Length: 346)
Name: NF0896_low_22
Description: NF0896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0896_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 40962347 - 40962564
Alignment:
| Q |
1 |
aacgccttatcaatgaattggtctctacttagatgaaaattcaagtgagcttgagattttataatacatttcactggaatactccttcgggactgatatg |
100 |
Q |
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| T |
40962347 |
aacgccttatcaatgaattggtctctacttagatgaaaattcaagtgagcttgagattttataatacatttcactggaatactccttcgggactgatatg |
40962446 |
T |
|
| Q |
101 |
atatgttattggctttcagtgtgcatctggtggagctagaaggaactggtcaatacttcgcaatgaaggctatggataagggagttatgctcaatcgcaa |
200 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
40962447 |
atatgttatcggctttcagtgtgcatctggtggagctagaaggaactggtcaatacttcgcaatgaaggctatggataagggtgttatgctcaatcgcaa |
40962546 |
T |
|
| Q |
201 |
taaggttctgagtttgat |
218 |
Q |
| |
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|||||||||||||||||| |
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| T |
40962547 |
taaggttctgagtttgat |
40962564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 206
Target Start/End: Original strand, 22798227 - 22798317
Alignment:
| Q |
116 |
tcagtgtgcatctggtggagctagaaggaactggtcaatacttcgcaatgaaggctatggataagggagttatgctcaatcgcaataaggt |
206 |
Q |
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||||||| ||||| ||||||||| ||||||| |||| | || || |||||||||||||| |||| ||||||||||| || |||||||| |
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| T |
22798227 |
tcagtgtccatcttgtggagctatgtggaactgatcaacattttgccatgaaggctatggagaaggctgttatgctcaaccgtaataaggt |
22798317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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