View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0896_low_23 (Length: 323)
Name: NF0896_low_23
Description: NF0896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0896_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 95 - 236
Target Start/End: Complemental strand, 23057056 - 23056915
Alignment:
| Q |
95 |
catcatcacccatccttctcctcaccaccgtcgttcacccccaccatcgaatctactcaaactcttccatcctcaccaccccacctcatcttctccaacc |
194 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||| || ||||||||||| | |||||||||||||||||||||||||||||||| ||| |
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| T |
23057056 |
catcatcactcatccttctcctcaccaccgtcgttcacccccaccaccggatctactcaaatttttccatcctcaccaccccacctcatcttctccgacc |
23056957 |
T |
|
| Q |
195 |
accttgcctccttttcttctctggtcataccaccaccacctt |
236 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
23056956 |
accttgcctccttttcttctctggtcataccaccaccacctt |
23056915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 98 - 196
Target Start/End: Original strand, 38336812 - 38336909
Alignment:
| Q |
98 |
catcacccatccttctcctcaccaccgtcgttcacccccaccatcgaatctactcaaactcttccatcctcaccaccccacctcatcttctccaaccac |
196 |
Q |
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||||||||||||||||| ||||||||| |||||| ||||||||||||| ||||||||| |||||| ||||||||||||||||| || || |||||| |
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| T |
38336812 |
catcacccatccttctcttcaccaccgccgttca-ccccaccatcgaaactactcaaatcaatccatcatcaccaccccacctcatattttctaaccac |
38336909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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