View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0896_low_24 (Length: 320)
Name: NF0896_low_24
Description: NF0896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0896_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 88 - 291
Target Start/End: Complemental strand, 11853052 - 11852847
Alignment:
| Q |
88 |
ggtgatttaaatggtggaaacagtaacaaaaaagaggaacaagaaggagaaaaaa-tattagagttatgtgtcaaaagataatagatgaaacttgacaaa |
186 |
Q |
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| T |
11853052 |
ggtgatttaaatggtggaaacagtaacaaaaaagaggaacaagaaggagaaaaaaatattagagttatgtgtcaaaagataatagatgaaacatgacaaa |
11852953 |
T |
|
| Q |
187 |
attagatggagtggatgatgaattcactttagacgatgatgagatacagaaagaatgatgaaaaaatggtaag-aaatatataaaagaagaaacacatat |
285 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |||| ||||||||||| |
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| T |
11852952 |
attagatggagtggatgatgaattcactttagacgatgatgagatacagaaagaatgatgaaaaaatgttaagaaaatatatagaagatgaaacacatat |
11852853 |
T |
|
| Q |
286 |
taatgg |
291 |
Q |
| |
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|||||| |
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|
| T |
11852852 |
taatgg |
11852847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 198
Target Start/End: Original strand, 51794097 - 51794129
Alignment:
| Q |
166 |
taatagatgaaacttgacaaaattagatggagt |
198 |
Q |
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||||||||||||||| ||||||||||||||||| |
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| T |
51794097 |
taatagatgaaacttaacaaaattagatggagt |
51794129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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