View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0896_low_26 (Length: 319)

Name: NF0896_low_26
Description: NF0896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0896_low_26
NF0896_low_26
[»] chr7 (1 HSPs)
chr7 (88-290)||(11852847-11853052)
[»] chr4 (1 HSPs)
chr4 (165-197)||(51794097-51794129)


Alignment Details
Target: chr7 (Bit Score: 166; Significance: 8e-89; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 88 - 290
Target Start/End: Complemental strand, 11853052 - 11852847
Alignment:
Q  88 ggtgatttaaatggtggaaacagtaacaaaaa-gaggaacaagaaggagaaaaaa-tattagagttatgtgtcaaaagataatagatgaaacttgacaaa 185  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||    
T  11853052 ggtgatttaaatggtggaaacagtaacaaaaaagaggaacaagaaggagaaaaaaatattagagttatgtgtcaaaagataatagatgaaacatgacaaa 11852953  T
Q  186 attagatggagtggatgatgaattcactttagacgatgatgagatacagaaagaatgatgaaaaaatggtaag-aaatatataaaagaagaaacacatat 284  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |||| |||||||||||    
T  11852952 attagatggagtggatgatgaattcactttagacgatgatgagatacagaaagaatgatgaaaaaatgttaagaaaatatatagaagatgaaacacatat 11852853  T
Q  285 taatgg 290  Q
    ||||||    
T  11852852 taatgg 11852847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 197
Target Start/End: Original strand, 51794097 - 51794129
Alignment:
Q  165 taatagatgaaacttgacaaaattagatggagt 197  Q
    ||||||||||||||| |||||||||||||||||    
T  51794097 taatagatgaaacttaacaaaattagatggagt 51794129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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