View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0896_low_27 (Length: 310)
Name: NF0896_low_27
Description: NF0896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0896_low_27 |
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| [»] chr8 (1 HSPs) |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 171; Significance: 8e-92; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 94 - 310
Target Start/End: Original strand, 39854372 - 39854587
Alignment:
| Q |
94 |
catcatcatatgctaaatcaatttcattgcagtgtaattctgaaactttttgttgagatgacaacatatgaattatttcttgcagatgtaaatcatggtt |
193 |
Q |
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| T |
39854372 |
catcatcatatactaaatcaatttcattgcagtgtaattctgaaacttttcgttgagatgacaacatatgaattgtttcttgcagatgtaaatcatggtt |
39854471 |
T |
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| Q |
194 |
atgctcttccacaaattcatgaaccaccannnnnnncaaccacatttttaattcctaatcttgctcgacaattcgttctagtctctagtcttggattgac |
293 |
Q |
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| T |
39854472 |
atgctcttccacaaattcatgaaccacca-ttttttcaaccacatttttaagtcctaatcttgctcgacaattcgttctagtctctagtcttggattgac |
39854570 |
T |
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| Q |
294 |
tgttttatgatcatgtt |
310 |
Q |
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||||||| ||||||||| |
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| T |
39854571 |
tgttttacgatcatgtt |
39854587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 107 - 301
Target Start/End: Complemental strand, 21955622 - 21955429
Alignment:
| Q |
107 |
taaatcaatttcattgcagtgtaattctgaaactttttgttgagatgacaacatatgaattatttcttgcagatgtaaatcatggttatgctcttccaca |
206 |
Q |
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|||||||||||||||||| || |||| ||| |||||||||||||||||||||||||||| | ||| | |||||||||||||||||||| || || || |
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| T |
21955622 |
taaatcaatttcattgcaatgaaattttgatactttttgttgagatgacaacatatgaagtgtttgtgatagatgtaaatcatggttatgttcctctgca |
21955523 |
T |
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| Q |
207 |
aattcatgaaccaccannnnnnncaaccacatttttaattcctaatcttgctcgacaattcgttctagtctctagtcttggattgactgttttat |
301 |
Q |
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| T |
21955522 |
aattcatgcaccaccaatgttgg-aaccacatttttaagtcctggtgttgctttacaatttgttacagtctctggttttggattgattgttttat |
21955429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 135 - 290
Target Start/End: Original strand, 466625 - 466779
Alignment:
| Q |
135 |
gaaactttttgttgagatgacaacatatgaattatttcttgcagatgtaaatcatggttatgctcttccacaaattcatgaaccaccannnnnnncaacc |
234 |
Q |
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| T |
466625 |
gaaacctttcgttgagacgacaacatatgagttgtttctggcaaaagtaactcgtggttgtggtcctccacaaaatcatgcaccatcaattttc-catcc |
466723 |
T |
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| Q |
235 |
acatttttaattcctaatcttgctcgacaattcgttctagtctctagtcttggatt |
290 |
Q |
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| T |
466724 |
acattcttaagtcctaaccttgcttcacaatttgttctggtctctagtcttggatt |
466779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 135 - 290
Target Start/End: Complemental strand, 35896295 - 35896141
Alignment:
| Q |
135 |
gaaactttttgttgagatgacaacatatgaattatttcttgcagatgtaaatcatggttatgctcttccacaaattcatgaaccaccannnnnnncaacc |
234 |
Q |
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| T |
35896295 |
gaaacctttcgttgagacgacaacatatgagttgtttctggcaaaagtaactcgtggttgtggtcctccacaaaatcatgcaccatcaattttc-catcc |
35896197 |
T |
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| Q |
235 |
acatttttaattcctaatcttgctcgacaattcgttctagtctctagtcttggatt |
290 |
Q |
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| T |
35896196 |
acattcttaagtcctaaccttgcttcacaatttgttctggtctctagtcttggatt |
35896141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 135 - 290
Target Start/End: Original strand, 52056034 - 52056188
Alignment:
| Q |
135 |
gaaactttttgttgagatgacaacatatgaattatttcttgcagatgtaaatcatggttatgctcttccacaaattcatgaaccaccannnnnnncaacc |
234 |
Q |
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| T |
52056034 |
gaaacctttcgttgagacgacaacatatgagttgtttctggcaaaagtaactcgtggttgtggtcctccacaaaatcatgcaccatcaattttc-catcc |
52056132 |
T |
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| Q |
235 |
acatttttaattcctaatcttgctcgacaattcgttctagtctctagtcttggatt |
290 |
Q |
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| T |
52056133 |
acattcttaagtcctaaccttgcttcacaatttgttctggtctctagtcttggatt |
52056188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 135 - 290
Target Start/End: Original strand, 53575644 - 53575798
Alignment:
| Q |
135 |
gaaactttttgttgagatgacaacatatgaattatttcttgcagatgtaaatcatggttatgctcttccacaaattcatgaaccaccannnnnnncaacc |
234 |
Q |
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| T |
53575644 |
gaaacctttcgttgagacgacaacatatgagttgtttctggcaaaagtaactcgtggttgtggtcctccacaaaatcatgcaccatcaattttc-catcc |
53575742 |
T |
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| Q |
235 |
acatttttaattcctaatcttgctcgacaattcgttctagtctctagtcttggatt |
290 |
Q |
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||||| |||| |||||| |||||| |||||| ||||| ||||||||||||||||| |
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| T |
53575743 |
acattcttaagtcctaaccttgcttcacaatttgttctggtctctagtcttggatt |
53575798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 135 - 290
Target Start/End: Original strand, 30200789 - 30200943
Alignment:
| Q |
135 |
gaaactttttgttgagatgacaacatatgaattatttcttgcagatgtaaatcatggttatgctcttccacaaattcatgaaccaccannnnnnncaacc |
234 |
Q |
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||||| ||| ||||||| |||||||||||| || ||||| ||| | |||| || ||||| || || |||||||| ||||| |||| || || || |
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| T |
30200789 |
gaaacctttcgttgagacgacaacatatgagttgtttctggcaaaagtaactcgtggttgtggtcctccacaaaatcatgcaccatcaattttc-catcc |
30200887 |
T |
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| Q |
235 |
acatttttaattcctaatcttgctcgacaattcgttctagtctctagtcttggatt |
290 |
Q |
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||||| |||| |||||| |||||| |||||| ||||| ||||||||||||||||| |
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| T |
30200888 |
acattcttaagtcctaaccttgcttcacaatttgttctggtctctagtcttggatt |
30200943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 135 - 290
Target Start/End: Complemental strand, 31353833 - 31353679
Alignment:
| Q |
135 |
gaaactttttgttgagatgacaacatatgaattatttcttgcagatgtaaatcatggttatgctcttccacaaattcatgaaccaccannnnnnncaacc |
234 |
Q |
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||||| ||| ||||||| |||||||||||| || ||||| ||| | |||| || ||||| || || |||||||| ||||| |||| || || || |
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| T |
31353833 |
gaaacctttcgttgagacgacaacatatgagttgtttctggcaaaagtaactcgtggttgtggtcctccacaaaatcatgcaccatcaattttc-catcc |
31353735 |
T |
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| Q |
235 |
acatttttaattcctaatcttgctcgacaattcgttctagtctctagtcttggatt |
290 |
Q |
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||||| |||| |||||| |||||| |||||| ||||| ||||||||||||||||| |
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| T |
31353734 |
acattcttaagtcctaaccttgcttcacaatttgttctggtctctagtcttggatt |
31353679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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