View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0896_low_28 (Length: 309)
Name: NF0896_low_28
Description: NF0896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0896_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 29 - 303
Target Start/End: Original strand, 46186134 - 46186404
Alignment:
| Q |
29 |
aatttgcagaaaatgtttcttttataaacaaatgaagcatgctcctcaagttttgatcgagtagttaaaatttgcttggattcatattctttcgacctcc |
128 |
Q |
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| T |
46186134 |
aatttgcagaaaatttttcttttataaacaaatgaagcatgctcttcaagttttgatccagtagttaaaatgcgcttggattcatattctttcgacctcc |
46186233 |
T |
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| Q |
129 |
aatcagctttcaactgctttctcaaactttaccataaattattgcaatgttgttgttgcatccacaatagaatatnnnnnnnnnnngcattaatactttc |
228 |
Q |
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| T |
46186234 |
aatcggctttcaactgctttctcaaactttaccataaattattgcaatgttgttgttgcatccacaatagaat----taaaaaaaagcattaatactttc |
46186329 |
T |
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| Q |
229 |
ggttcttttgagtattattaatgtgcttctattataaattggtatccatgattctctaatcttgtataacccttg |
303 |
Q |
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| T |
46186330 |
ggttcttttgagtattattaatgtgcttctattataaattggtatccatgattctctaatcttgtataacccttg |
46186404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 253 - 303
Target Start/End: Complemental strand, 11326755 - 11326705
Alignment:
| Q |
253 |
gcttctattataaattggtatccatgattctctaatcttgtataacccttg |
303 |
Q |
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| T |
11326755 |
gcttctattataaactggtatccaagattctctaattttatataacccttg |
11326705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 253 - 303
Target Start/End: Original strand, 13223272 - 13223322
Alignment:
| Q |
253 |
gcttctattataaattggtatccatgattctctaatcttgtataacccttg |
303 |
Q |
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| T |
13223272 |
gcttctattataaactggtatccaagattctctaattttatataacccttg |
13223322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 253 - 303
Target Start/End: Original strand, 15272100 - 15272150
Alignment:
| Q |
253 |
gcttctattataaattggtatccatgattctctaatcttgtataacccttg |
303 |
Q |
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|||||||||||||| ||||||||| ||||||||||| || ||||||||||| |
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| T |
15272100 |
gcttctattataaactggtatccaagattctctaattttatataacccttg |
15272150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 253 - 303
Target Start/End: Complemental strand, 40874925 - 40874875
Alignment:
| Q |
253 |
gcttctattataaattggtatccatgattctctaatcttgtataacccttg |
303 |
Q |
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| T |
40874925 |
gcttctattataaactggtatccaagattctctaattttatataacccttg |
40874875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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