View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0896_low_29 (Length: 308)
Name: NF0896_low_29
Description: NF0896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0896_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 91; Significance: 4e-44; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 6123807 - 6123706
Alignment:
| Q |
1 |
ttcataaaataaatagaaaactagtaagaaaagggtatactattttattttagtttttggtcaaggaaaagga--tatagtattaattaatttaattttc |
98 |
Q |
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| T |
6123807 |
ttcataaaataaatagaaaactagtaagaaaagggtatactattttattttagtttttggtcaaggaaaaggatatatagtattaattaatttaattttc |
6123708 |
T |
|
| Q |
99 |
ac |
100 |
Q |
| |
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|| |
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|
| T |
6123707 |
ac |
6123706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 176 - 214
Target Start/End: Complemental strand, 6123630 - 6123592
Alignment:
| Q |
176 |
agttgtcattaggtatcaatcaattgatgctatacgaaa |
214 |
Q |
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||||||||||||||||| ||||||||||||||||||||| |
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| T |
6123630 |
agttgtcattaggtatcgatcaattgatgctatacgaaa |
6123592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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