View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0896_low_3 (Length: 671)
Name: NF0896_low_3
Description: NF0896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0896_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 328 - 663
Target Start/End: Original strand, 10811970 - 10812295
Alignment:
| Q |
328 |
atactagacattacaatcatgcatgatattgcttctaatatttgtacttggttaatttggaataactggaacagagaaatatggttctgccattggtgca |
427 |
Q |
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| T |
10811970 |
atactagacattataatcatgcatgatattgctcctattattt----------aatttggaataactggaacagagaaatatggttctgccattggtgca |
10812059 |
T |
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| Q |
428 |
tcaattcccatcatccttgattcactagcaacatctccaaggaaaccattgtaaaatgctttaaccttaattactatgtaaagaaaagatgttgcaatgt |
527 |
Q |
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| T |
10812060 |
tcaattcccatcatccttgattcactagcaacatctccaaggaaaccattgtaaaattctttaaccttaattactatgtaaagaaaagatgttgcaatgt |
10812159 |
T |
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| Q |
528 |
aagagaatcccaacctgtgaagcttttgtgcttgagctagatttgtgctatgttttgtacccttttcaagcgatgatcccttgtttttgtgttctttgaa |
627 |
Q |
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| T |
10812160 |
aagagaatcccaacctgtgaagcttttgtgcttgagctagatttgtgctacgttttgtacccttttcaagcgatgatcccttatttttgtgttctttgaa |
10812259 |
T |
|
| Q |
628 |
gttgctttcttcagggtagatgatgctattcatctc |
663 |
Q |
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| T |
10812260 |
gttgctttcttcagggtagatgatgctattcttctc |
10812295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 30 - 269
Target Start/End: Original strand, 10811676 - 10811915
Alignment:
| Q |
30 |
gagttgtgcaatttgctaaacacaaacagccacaatattgaggttaaccagcttttggcnnnnnnnnnnnnnnnnngttaccaatgta-------tagca |
122 |
Q |
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| T |
10811676 |
gagttgtgcaatttgctaaacacaaacagccacaatattgaggtgaaccagcttttggc---aacaaaataaaaaagttatcaatgtatataatatagca |
10811772 |
T |
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| Q |
123 |
ccaaaataacactaatatatattttggttaaatattacattcaatacttcattacataaatatgtaattttactacaaaagtagggaacatttaagcaaa |
222 |
Q |
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| T |
10811773 |
ccaaaatattactaat----attttgtttaaatattacattcattacttcattacataaatatgtaattttacttcaaaagtagggaacatttaagcaaa |
10811868 |
T |
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| Q |
223 |
tctgtgctaattaattactacaaaagttcacctcaaatttgatacta |
269 |
Q |
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| T |
10811869 |
tctgtgctaattaattactacaaaagttcacctcaaatttgatacta |
10811915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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