View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0896_low_32 (Length: 294)
Name: NF0896_low_32
Description: NF0896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0896_low_32 |
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Alignment Details
Target: chr7 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 131 - 262
Target Start/End: Complemental strand, 13942879 - 13942748
Alignment:
| Q |
131 |
ttccctcaacatctagtaaagtcgcaggaaaatctatgtcagctgagatgccaaccatattttgatccagaaaatcctcttgatatgcagagtcatcaac |
230 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13942879 |
ttccctcaacatctagtaaagtcgcaggcaaatctatgtcagctgagatgccaaccatattttgatccagaaaatcctcttgatatgcagagtcatcaac |
13942780 |
T |
|
| Q |
231 |
ttgttgatcctcaatcacacctcttgcctttg |
262 |
Q |
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| T |
13942779 |
ttgttgatcctcaatcacacctcttgcctttg |
13942748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 131 - 262
Target Start/End: Original strand, 15254418 - 15254549
Alignment:
| Q |
131 |
ttccctcaacatctagtaaagtcgcaggaaaatctatgtcagctgagatgccaaccatattttgatccagaaaatcctcttgatatgcagagtcatcaac |
230 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15254418 |
ttccctcaacatctagtaaagtcgcaggcaaatctatgtcagctgagatgccaaccatattttgatccagaaaatcctcttgatatgcagagtcatcaac |
15254517 |
T |
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| Q |
231 |
ttgttgatcctcaatcacacctcttgcctttg |
262 |
Q |
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| T |
15254518 |
ttgttgatcctcaatcacacctcttgcctttg |
15254549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 131 - 262
Target Start/End: Complemental strand, 15719924 - 15719793
Alignment:
| Q |
131 |
ttccctcaacatctagtaaagtcgcaggaaaatctatgtcagctgagatgccaaccatattttgatccagaaaatcctcttgatatgcagagtcatcaac |
230 |
Q |
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|||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15719924 |
ttccctcaacatctagtaaattcgcaggcaaatctatgtcagctgagatgccaaccatattttgatccagaaaatcctcttgatatgcagagtcatcaac |
15719825 |
T |
|
| Q |
231 |
ttgttgatcctcaatcacacctcttgcctttg |
262 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
15719824 |
ttgttgatcctcaatcacacctcttgcctttg |
15719793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 116; Significance: 5e-59; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 131 - 262
Target Start/End: Complemental strand, 21574806 - 21574675
Alignment:
| Q |
131 |
ttccctcaacatctagtaaagtcgcaggaaaatctatgtcagctgagatgccaaccatattttgatccagaaaatcctcttgatatgcagagtcatcaac |
230 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21574806 |
ttccctcaacatctagtaaagttgcaggcaaatctatgtcagctgagatgccagccatattttgatccagaaaatcctcttgatatgcagagtcatcaac |
21574707 |
T |
|
| Q |
231 |
ttgttgatcctcaatcacacctcttgcctttg |
262 |
Q |
| |
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|||||||||||| ||||||||||||||||||| |
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| T |
21574706 |
ttgttgatcctcgatcacacctcttgcctttg |
21574675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 131 - 262
Target Start/End: Complemental strand, 17003012 - 17002881
Alignment:
| Q |
131 |
ttccctcaacatctagtaaagtcgcaggaaaatctatgtcagctgagatgccaaccatattttgatccagaaaatcctcttgatatgcagagtcatcaac |
230 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
17003012 |
ttccctcaacatctagtaaagtcgcaggcaaatctatgtcagctgagatgccagcaatattttgatccagaaaatcctcttgatatgcagagtcttcaac |
17002913 |
T |
|
| Q |
231 |
ttgttgatcctcaatcacacctcttgcctttg |
262 |
Q |
| |
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|||||||||||| ||||||||||||||||||| |
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| T |
17002912 |
ttgttgatcctcgatcacacctcttgcctttg |
17002881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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