View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0896_low_37 (Length: 265)
Name: NF0896_low_37
Description: NF0896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0896_low_37 |
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Alignment Details
Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 36222090 - 36221990
Alignment:
| Q |
1 |
ttccaaatctcatggtctcttacgaatatccacttatttaatttaaatcaaattttgagaatagagaacttcctaatgttttgacagccagcggaactcc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |||||||||||||||||||||||||||||||||||||| |
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| T |
36222090 |
ttccaaatctcatggtctcttacgaatatccacttatttaa-----atcaaattttgataacagagaacttcctaatgttttgacagccagcggaactcc |
36221996 |
T |
|
| Q |
101 |
agcaca |
106 |
Q |
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|||||| |
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| T |
36221995 |
agcaca |
36221990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 171 - 236
Target Start/End: Complemental strand, 36221926 - 36221861
Alignment:
| Q |
171 |
aaatgcccatttcacaaacaaatacaaatagctctcttgcgaaagaccttccaaaatatacgaagg |
236 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
36221926 |
aaatgcccatttcacaaacaaatacaaacagctctcttgcgaaagaccttccaaaatatacgaagg |
36221861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 36218099 - 36217999
Alignment:
| Q |
1 |
ttccaaatctcatggtctcttacgaatatccacttatttaatttaaatcaaattttgagaatagagaacttcctaatgttttgacagccagcggaactcc |
100 |
Q |
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||||| ||||||||||||||||| |||| |||||| || |||||||||||||||||| ||||||||||||| ||| | ||||||||||||||||| |
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| T |
36218099 |
ttccatatctcatggtctcttacaaataaccactt-----atctaaatcaaattttgagaacagagaacttcctaccgttctcacagccagcggaactcc |
36218005 |
T |
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| Q |
101 |
agcaca |
106 |
Q |
| |
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|||||| |
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| T |
36218004 |
agcaca |
36217999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 41 - 100
Target Start/End: Original strand, 35938945 - 35939004
Alignment:
| Q |
41 |
atttaaatcaaattttgagaatagagaacttcctaatgttttgacagccagcggaactcc |
100 |
Q |
| |
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|||||||||||||||||| || |||||||||||||||||||| |||||||| |||||||| |
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| T |
35938945 |
atttaaatcaaattttgaaaacagagaacttcctaatgttttcacagccagtggaactcc |
35939004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 41 - 100
Target Start/End: Original strand, 35981628 - 35981687
Alignment:
| Q |
41 |
atttaaatcaaattttgagaatagagaacttcctaatgttttgacagccagcggaactcc |
100 |
Q |
| |
|
||||||||||| ||||| || || ||||||||||||||||||||||| || |||||||| |
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| T |
35981628 |
atttaaatcaagctttgaaaacagggaacttcctaatgttttgacagctagtggaactcc |
35981687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 41 - 100
Target Start/End: Original strand, 36003040 - 36003099
Alignment:
| Q |
41 |
atttaaatcaaattttgagaatagagaacttcctaatgttttgacagccagcggaactcc |
100 |
Q |
| |
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||||||||||| ||||| || || ||||||||||||||||||||||| || |||||||| |
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| T |
36003040 |
atttaaatcaagctttgaaaacagggaacttcctaatgttttgacagctagtggaactcc |
36003099 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 97
Target Start/End: Original strand, 35977068 - 35977118
Alignment:
| Q |
47 |
atcaaattttgagaatagagaacttcctaatgttttgacagccagcggaac |
97 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||| | ||||| |||||||| |
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|
| T |
35977068 |
atcaaagtttgagaagagagaacttcctaatgttctcacagctagcggaac |
35977118 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 97
Target Start/End: Original strand, 35998480 - 35998530
Alignment:
| Q |
47 |
atcaaattttgagaatagagaacttcctaatgttttgacagccagcggaac |
97 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||| | ||||| |||||||| |
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|
| T |
35998480 |
atcaaagtttgagaagagagaacttcctaatgttctcacagctagcggaac |
35998530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 236
Target Start/End: Complemental strand, 36217934 - 36217870
Alignment:
| Q |
172 |
aatgcccatttcacaaacaaatacaaatagctctcttgcgaaagaccttccaaaatatacgaagg |
236 |
Q |
| |
|
||||||||||||||||||| | ||||| | |||| ||||||||||||||||| ||||||||| |
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| T |
36217934 |
aatgcccatttcacaaacagagacaaacaatcctctaacgaaagaccttccaaaacatacgaagg |
36217870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 41 - 97
Target Start/End: Original strand, 18125327 - 18125383
Alignment:
| Q |
41 |
atttaaatcaaattttgagaatagagaacttcctaatgttttgacagccagcggaac |
97 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||| | ||||| || ||||| |
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| T |
18125327 |
atttaaatcaaattttgagaatagggaacttcctaatgttctaacagctagtggaac |
18125383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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