View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0896_low_38 (Length: 264)
Name: NF0896_low_38
Description: NF0896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0896_low_38 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 23 - 264
Target Start/End: Complemental strand, 23694819 - 23694578
Alignment:
| Q |
23 |
atcatcaaaaggacaataaaatttctgtgaacctaacaccatattctcacaaagtgcattttcccatctatcaaacacatcctttgctaaaattgaacta |
122 |
Q |
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| T |
23694819 |
atcattaaaaggacaataaaatttctgtgaacctaacaccatattctcacaaagtgcattttcccatctatcaaacacatcctttggtaaaattgaacta |
23694720 |
T |
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| Q |
123 |
caatcatgaggctccaaaatatcattgcattttggatcaggacattttaccattgatatactctcttgaatttttgcagctagatatcttccaacacaat |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
23694719 |
caatcatgaggctccaaaatatcattgcattttggatcaggacattttaccattgatatactctcttgaatttttgcagctagatatcttccaagacaat |
23694620 |
T |
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| Q |
223 |
cttcacagaaagagtgtgaacattttcggttttggaacattt |
264 |
Q |
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| T |
23694619 |
cttcacagaaagaatgtgaacatttttggttctggaacattt |
23694578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 23 - 264
Target Start/End: Original strand, 23700982 - 23701225
Alignment:
| Q |
23 |
atcatcaaaaggacaataaaatttctgtgaacctaacaccatattctcacaaagtgcattttcccatctatcaaacacatcctttgctaaaattgaacta |
122 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| | |
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| T |
23700982 |
atcattaaaaggacaataaaatttctgtgaacctaacaccatattctcacaaagtgaattttcccatctatcaaacacatcctttggtaaaattgaacaa |
23701081 |
T |
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| Q |
123 |
caatcatgaggctccaaaatatcattgcattttggatcaggacattttaccattgatatactctct--tgaatttttgcagctagatatcttccaacaca |
220 |
Q |
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| T |
23701082 |
caatcatgaggctccaaaatatcattgcattttggatcaggacattttaccattgatatactctcttgtgaatttttgcagctagatatcttccaacaca |
23701181 |
T |
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| Q |
221 |
atcttcacagaaagagtgtgaacattttcggttttggaacattt |
264 |
Q |
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| T |
23701182 |
atattcacagaaagagtgtgaacattttcggttttggaacattt |
23701225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 23 - 264
Target Start/End: Complemental strand, 23696950 - 23696709
Alignment:
| Q |
23 |
atcatcaaaaggacaataaaatttctgtgaacctaacaccatattctcacaaagtgcattttcccatctatcaaacacatcctttgctaaaattgaacta |
122 |
Q |
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||||| ||||||||| || ||||| |||||| ||||||||||||||||||||||||| ||| ||||||| |||||||||||||||| || || | ||| |
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| T |
23696950 |
atcattaaaaggacagtacaatttttgtgaatctaacaccatattctcacaaagtgcctttccccatctctcaaacacatcctttggtataagggtgcta |
23696851 |
T |
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| Q |
123 |
caatcatgaggctccaaaatatcattgcattttggatcaggacattttaccattgatatactctcttgaatttttgcagctagatatcttccaacacaat |
222 |
Q |
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|||| |||||||||||| ||| ||||||| ||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||| |
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| T |
23696850 |
caattatgaggctccaatataccattgcaatttggataaggacattttaccattgctatattctcttgaatttttgcagctagataacttccaacacatc |
23696751 |
T |
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| Q |
223 |
cttcacagaaagagtgtgaacattttcggttttggaacattt |
264 |
Q |
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|||||||||||||||||||||| ||| |||||| |||||||| |
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| T |
23696750 |
cttcacagaaagagtgtgaacagttttggttttcgaacattt |
23696709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 75 - 249
Target Start/End: Original strand, 8149174 - 8149348
Alignment:
| Q |
75 |
agtgcattttcccatctatcaaacacatcctttgctaaaattgaactacaatcatgaggctccaaaatatcattgcattttggatcaggacattttacca |
174 |
Q |
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||||||| | ||||||| || ||||||||||||| || ||||||| |||| | |||| || ||| || |||||| ||||||||||||||||||| |
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| T |
8149174 |
agtgcatctccccatctttcgaacacatcctttggtataattgaaatacattgttgagtgtcaaaattactattgcaatttggatcaggacattttattg |
8149273 |
T |
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| Q |
175 |
ttgatatactctcttgaatttttgcagctagatatcttccaacacaatcttcacagaaagagtgtgaacattttc |
249 |
Q |
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||| | | ||||||||||||| |||||||| ||||| ||||||||||||||||||||||||| ||||| |||| |
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| T |
8149274 |
ttgcttttttctcttgaattttcacagctagaaatcttgcaacacaatcttcacagaaagagtgcgaacagtttc |
8149348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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