View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0896_low_44 (Length: 255)
Name: NF0896_low_44
Description: NF0896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0896_low_44 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 23 - 255
Target Start/End: Complemental strand, 42875964 - 42875732
Alignment:
| Q |
23 |
atcatctgttctaccaatacaatccaaaaggtgctgtttggggaaatattgtgtgggcccattcagtatcaaaggatcttgtgaattggacaccattgga |
122 |
Q |
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| T |
42875964 |
atcatctgttctaccaatacaatccaaaaggtgctgtttggggaaatattgtgtgggcccattcagcatcaaaggatcttgtgaattggacaccattgga |
42875865 |
T |
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| Q |
123 |
tcatgcaatccacccatctcaaccgtcagatataaaaggttgttggtcaggctcagcaacaatacttccaggtggcaaaccagcaattttgtacacagga |
222 |
Q |
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| T |
42875864 |
tcatgcaatccacccatctcaaccgtcagatataaaaggttgttggtcaggctcagcaacaatacttccaggtggcaaaccagcaattttatacacagga |
42875765 |
T |
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| Q |
223 |
attgatccaaataatcatcaagttcaaaacata |
255 |
Q |
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| T |
42875764 |
attgatccaaataatcatcaagttcaaaacata |
42875732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 23 - 251
Target Start/End: Original strand, 5902373 - 5902601
Alignment:
| Q |
23 |
atcatctgttctaccaatacaatccaaaaggtgctgtttggggaaatattgtgtgggcccattcagtatcaaaggatcttgtgaattggacaccattgga |
122 |
Q |
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| T |
5902373 |
atcatctattctaccaatacaatcctaaaggtgcagtttggggaaatattgtatgggcacattctgtttcaactgatcttgttaactggaccccactaga |
5902472 |
T |
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| Q |
123 |
tcatgcaatccacccatctcaaccgtcagatataaaaggttgttggtcaggctcagcaacaatacttccaggtggcaaaccagcaattttgtacacagga |
222 |
Q |
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| T |
5902473 |
tccagccatctttccatctcaaccgtccgatataaatggttgttggtcaggatcagccacaatacttcatggtaacaaaccagctattttatacactgga |
5902572 |
T |
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| Q |
223 |
attgatccaaataatcatcaagttcaaaa |
251 |
Q |
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| T |
5902573 |
attgacccaatgaatcaccaagttcaaaa |
5902601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 31 - 102
Target Start/End: Original strand, 42590361 - 42590432
Alignment:
| Q |
31 |
ttctaccaatacaatccaaaaggtgctgtttggggaaatattgtgtgggcccattcagtatcaaaggatctt |
102 |
Q |
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| T |
42590361 |
ttctaccagtacaacccaaaaggatctgtatggggaaacattgtgtgggcccactcagtatcaaaggatctt |
42590432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 161 - 229
Target Start/End: Complemental strand, 4118525 - 4118457
Alignment:
| Q |
161 |
gttgttggtcaggctcagcaacaatacttccaggtggcaaaccagcaattttgtacacaggaattgatc |
229 |
Q |
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| T |
4118525 |
gttgttggtcaggttcagcaactatactcccaggtgaaaaacctgctattttgtacacaggaattgatc |
4118457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 25 - 101
Target Start/End: Complemental strand, 25952748 - 25952672
Alignment:
| Q |
25 |
catctgttctaccaatacaatccaaaaggtgctgtttggggaaatattgtgtgggcccattcagtatcaaaggatct |
101 |
Q |
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| T |
25952748 |
catctattttaccagtacaatcccaaaggagctgtttggggtaacattgtgtgggggcactcagtatcaaaggatct |
25952672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 161 - 251
Target Start/End: Complemental strand, 4129717 - 4129627
Alignment:
| Q |
161 |
gttgttggtcaggctcagcaacaatacttccaggtggcaaaccagcaattttgtacacaggaattgatccaaataatcatcaagttcaaaa |
251 |
Q |
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||||||||||||| ||||| || ||||| ||||||| ||||| || || ||||| ||||||||||||| ||||| || ||||||||||| |
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| T |
4129717 |
gttgttggtcaggttcagccactatactcccaggtgaaaaacctgctatgttgtatacaggaattgatcaaaatagacaccaagttcaaaa |
4129627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 161 - 251
Target Start/End: Complemental strand, 4138433 - 4138343
Alignment:
| Q |
161 |
gttgttggtcaggctcagcaacaatacttccaggtggcaaaccagcaattttgtacacaggaattgatccaaataatcatcaagttcaaaa |
251 |
Q |
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| T |
4138433 |
gttgttggtcaggttcagccactatactcccaggtgaaaaacctgctatgttgtatacaggaattgatcaaaatagacaccaagttcaaaa |
4138343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 71
Target Start/End: Original strand, 42005609 - 42005649
Alignment:
| Q |
31 |
ttctaccaatacaatccaaaaggtgctgtttggggaaatat |
71 |
Q |
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| T |
42005609 |
ttctaccaatacaatccaaacggtgcagtttggggagatat |
42005649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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