View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0896_low_46 (Length: 251)

Name: NF0896_low_46
Description: NF0896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0896_low_46
NF0896_low_46
[»] chr7 (11 HSPs)
chr7 (11-251)||(36221999-36222234)
chr7 (47-251)||(36218008-36218207)
chr7 (44-251)||(35938799-35939001)
chr7 (43-234)||(32727038-32727224)
chr7 (43-251)||(35976915-35977118)
chr7 (43-251)||(35998327-35998530)
chr7 (47-251)||(35981485-35981684)
chr7 (47-251)||(36002897-36003096)
chr7 (43-166)||(35957460-35957583)
chr7 (62-234)||(35946271-35946438)
chr7 (61-251)||(35951909-35952094)
[»] chr1 (2 HSPs)
chr1 (46-251)||(18125183-18125383)
chr1 (46-175)||(18117530-18117659)
[»] chr2 (1 HSPs)
chr2 (43-147)||(26329140-26329244)


Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 11 - 251
Target Start/End: Complemental strand, 36222234 - 36221999
Alignment:
Q  11 cacagacaagtaatttcaacaatagaaaatgaataatctttgggatacaaggaaaaataagcaaaacaatgcctcaaataggatggcatttcatcatagc 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36222234 cacagacaagtaatttcaacaatagaaaatgaataatctttgggatacaaggaaaaataagcaaaacaatgcctcaaataggatggcatttcatcatagc 36222135  T
Q  111 ttaattttaatgcaggtaaaataccacctttcttttgttctaagttccaaatctcatggtctcttacgaatatccacttatttaatttaaatcaaatttt 210  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||    
T  36222134 ttaattttaatgcaggtaaaatatcacctttcttttgttctaagttccaaatctcatggtctcttacgaatatccacttat-----ttaaatcaaatttt 36222040  T
Q  211 gagaatagagaacttcctaatgttttgacagccagcggaac 251  Q
    || || |||||||||||||||||||||||||||||||||||    
T  36222039 gataacagagaacttcctaatgttttgacagccagcggaac 36221999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 47 - 251
Target Start/End: Complemental strand, 36218207 - 36218008
Alignment:
Q  47 tctttgggatacaaggaaaaataagcaaaacaatgcctcaaataggatggcatttcatcatagcttaattttaatgcaggtaaaataccacctttctttt 146  Q
    ||||||||||||||||||||| |||||||||| || |||| ||| |||||||||| |||||||||||||||||| |||||||||||| || ||||||| |    
T  36218207 tctttgggatacaaggaaaaacaagcaaaacattgtctcagatatgatggcatttgatcatagcttaattttaaagcaggtaaaatatcatctttcttct 36218108  T
Q  147 gttctaagttccaaatctcatggtctcttacgaatatccacttatttaatttaaatcaaattttgagaatagagaacttcctaatgttttgacagccagc 246  Q
    ||||||| ||||| ||||||||||||||||| |||| ||||||     || |||||||||||||||||| |||||||||||||  ||| | |||||||||    
T  36218107 gttctaaattccatatctcatggtctcttacaaataaccactt-----atctaaatcaaattttgagaacagagaacttcctaccgttctcacagccagc 36218013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 44 - 251
Target Start/End: Original strand, 35938799 - 35939001
Alignment:
Q  44 taatctttgggatacaaggaaaaataagcaaaacaatgcctcaaataggatggcatttcatcatagcttaattttaatgcaggtaaaataccacctttct 143  Q
    |||||||||||||| | |||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||| ||||||||||||| ||  || ||    
T  35938799 taatctttgggatatagggaaaaataagcaaaacagtgcctcaagtaggatggcatttgatcatagcttaattttagtgcaggtaaaatatcattttgct 35938898  T
Q  144 tttgttctaagttccaaatctcatggtctcttacgaatatccacttatttaatttaaatcaaattttgagaatagagaacttcctaatgttttgacagcc 243  Q
    | |||||||| ||||| ||||||   |||||||| |||  ||||||     |||||||||||||||||| || |||||||||||||||||||| ||||||    
T  35938899 tctgttctaaattccatatctcagaatctcttacaaattcccactt-----atttaaatcaaattttgaaaacagagaacttcctaatgttttcacagcc 35938993  T
Q  244 agcggaac 251  Q
    || |||||    
T  35938994 agtggaac 35939001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 43 - 234
Target Start/End: Original strand, 32727038 - 32727224
Alignment:
Q  43 ataatctttgggatacaaggaaaaataagcaaaacaatgcctcaaataggatggcatttcatcatagcttaattttaatgcaggtaaaataccacctttc 142  Q
    ||||||||||||||| | ||||||  |||||||||| |||||||||||||||||||||| |||||||||||| || ||||||||||||||| || |||||    
T  32727038 ataatctttgggataaagggaaaagaaagcaaaacattgcctcaaataggatggcatttgatcatagcttaacttcaatgcaggtaaaatatcatctttc 32727137  T
Q  143 ttttgttctaagttccaaatctcatggtctcttacgaatatccacttatttaatttaaatcaaattttgagaatagagaacttcctaatgtt 234  Q
    || |||||||| ||||| ||||||   ||||| || |||||||||||     |||||||||| ||||||||||||  ||||||| |||||||    
T  32727138 ttctgttctaaattccatatctcagaatctctcacaaatatccactt-----atttaaatcatattttgagaataaggaacttcgtaatgtt 32727224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 43 - 251
Target Start/End: Original strand, 35976915 - 35977118
Alignment:
Q  43 ataatctttgggatacaaggaaaaataagcaaaacaatgcctcaaataggatggcatttcatcatagcttaattttaatgcaggtaaaataccacctttc 142  Q
    ||||||||||||||| | ||||| |||| ||||||| || |||| ||| |||||||||| |||||||||||||||||  ||||||||||||||| |||||    
T  35976915 ataatctttgggataaagggaaatataaacaaaacattgtctcatatatgatggcatttgatcatagcttaattttagcgcaggtaaaataccatctttc 35977014  T
Q  143 ttttgttctaagttccaaatctcatggtctcttacgaatatccacttatttaatttaaatcaaattttgagaatagagaacttcctaatgttttgacagc 242  Q
    ||||||||||| ||||| ||||||  ||| || ||||||  ||||||       ||| |||||| |||||||| |||||||||||||||||| | |||||    
T  35977015 ttttgttctaaattccacatctcagagtccctaacgaattcccactt-----gcttatatcaaagtttgagaagagagaacttcctaatgttctcacagc 35977109  T
Q  243 cagcggaac 251  Q
     ||||||||    
T  35977110 tagcggaac 35977118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 43 - 251
Target Start/End: Original strand, 35998327 - 35998530
Alignment:
Q  43 ataatctttgggatacaaggaaaaataagcaaaacaatgcctcaaataggatggcatttcatcatagcttaattttaatgcaggtaaaataccacctttc 142  Q
    ||||||||||||||| | ||||| |||| ||||||| || |||| ||| |||||||||| |||||||||||||||||  ||||||||||||||| |||||    
T  35998327 ataatctttgggataaagggaaatataaacaaaacattgtctcatatatgatggcatttgatcatagcttaattttagcgcaggtaaaataccatctttc 35998426  T
Q  143 ttttgttctaagttccaaatctcatggtctcttacgaatatccacttatttaatttaaatcaaattttgagaatagagaacttcctaatgttttgacagc 242  Q
    ||||||||||| ||||| ||||||  ||| || ||||||  ||||||       ||| |||||| |||||||| |||||||||||||||||| | |||||    
T  35998427 ttttgttctaaattccacatctcagagtccctaacgaattcccactt-----gcttatatcaaagtttgagaagagagaacttcctaatgttctcacagc 35998521  T
Q  243 cagcggaac 251  Q
     ||||||||    
T  35998522 tagcggaac 35998530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 47 - 251
Target Start/End: Original strand, 35981485 - 35981684
Alignment:
Q  47 tctttgggatacaaggaaaaataagcaaaacaatgcctcaaataggatggcatttcatcatagcttaattttaatgcaggtaaaataccacctttctttt 146  Q
    ||||||||||| | |||||| ||||||||||| |||||||||||||||||||||| |||||| ||||| || |  |||||||||||| || ||||||| |    
T  35981485 tctttgggatagagggaaaagtaagcaaaacactgcctcaaataggatggcatttgatcataacttaacttcagggcaggtaaaatatcatctttcttct 35981584  T
Q  147 gttctaagttccaaatctcatggtctcttacgaatatccacttatttaatttaaatcaaattttgagaatagagaacttcctaatgttttgacagccagc 246  Q
    | ||||  ||||| | ||||   || ||||| |||| ||||||     |||||||||||  ||||| || || ||||||||||||||||||||||| ||     
T  35981585 gctctagattccataactcagaatcccttacaaatacccactt-----atttaaatcaagctttgaaaacagggaacttcctaatgttttgacagctagt 35981679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 47 - 251
Target Start/End: Original strand, 36002897 - 36003096
Alignment:
Q  47 tctttgggatacaaggaaaaataagcaaaacaatgcctcaaataggatggcatttcatcatagcttaattttaatgcaggtaaaataccacctttctttt 146  Q
    ||||||||||| | |||||| ||||||||||| |||||||||||||||||||||| |||||| ||||| || |  |||||||||||| || ||||||| |    
T  36002897 tctttgggatagagggaaaagtaagcaaaacactgcctcaaataggatggcatttgatcataacttaacttcagggcaggtaaaatatcatctttcttct 36002996  T
Q  147 gttctaagttccaaatctcatggtctcttacgaatatccacttatttaatttaaatcaaattttgagaatagagaacttcctaatgttttgacagccagc 246  Q
    | ||||  ||||| | ||||   || ||||| |||| ||||||     |||||||||||  ||||| || || ||||||||||||||||||||||| ||     
T  36002997 gctctagattccataactcagaatcccttacaaatacccactt-----atttaaatcaagctttgaaaacagggaacttcctaatgttttgacagctagt 36003091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 43 - 166
Target Start/End: Original strand, 35957460 - 35957583
Alignment:
Q  43 ataatctttgggatacaaggaaaaataagcaaaacaatgcctcaaataggatggcatttcatcatagcttaattttaatgcaggtaaaataccacctttc 142  Q
    ||||||||||||||| | |||||||||||||||||| || |||| ||| |||||||||| |||||| ||||||||||  |||||||||||| ||    ||    
T  35957460 ataatctttgggataaagggaaaaataagcaaaacattgtctcagatatgatggcatttgatcataacttaattttagcgcaggtaaaatatcattaatc 35957559  T
Q  143 ttttgttctaagttccaaatctca 166  Q
    ||||||||||| ||||| ||||||    
T  35957560 ttttgttctaaattccacatctca 35957583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 62 - 234
Target Start/End: Original strand, 35946271 - 35946438
Alignment:
Q  62 gaaaaataagcaaaacaatgcctcaaataggatggcatttcatcatagcttaattttaatgcaggtaaaataccacctttcttttgttctaagttccaaa 161  Q
    ||||||||||||||||| || || | ||| |||||||||| |||||| ||||||||||  |||||||| ||| || |||||||||||||||| ||||| |    
T  35946271 gaaaaataagcaaaacattgtcttagatatgatggcatttgatcataacttaattttagcgcaggtaagatatcatctttcttttgttctaaattccaca 35946370  T
Q  162 tctcatggtctcttacgaatatccacttatttaatttaaatcaaattttgagaatagagaacttcctaatgtt 234  Q
    |||||  ||| || ||||||  ||||||     | ||| |||||| |||||||| ||||||||| ||||||||    
T  35946371 tctcagagtccctaacgaattcccactt-----acttatatcaaagtttgagaagagagaacttgctaatgtt 35946438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 61 - 251
Target Start/End: Original strand, 35951909 - 35952094
Alignment:
Q  61 ggaaaaataagcaaaacaatgcctcaaataggatggcatttcatcatagcttaattttaatgcaggtaaaataccacctttcttttgttctaagttccaa 160  Q
    ||||||| | |||| |||||| || | |||||||| ||||| ||||||||||||||| |  |||||||||||| || |||||| ||||||||| ||||||    
T  35951909 ggaaaaagaggcaatacaatgtcttagataggatgacatttgatcatagcttaatttcagggcaggtaaaatatcatctttctgttgttctaaattccaa 35952008  T
Q  161 atctcatggtctcttacgaatatccacttatttaatttaaatcaaattttgagaatagagaacttcctaatgttttgacagccagcggaac 251  Q
    ||  ||  |||||| || |||  ||||||     | ||||||| || |||||||| || |||||||| |||| ||| |||||||| |||||    
T  35952009 atagcagagtctctgacaaattcccactt-----acttaaatcgaagtttgagaagagggaacttcccaatgatttcacagccagtggaac 35952094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 46 - 251
Target Start/End: Original strand, 18125183 - 18125383
Alignment:
Q  46 atctttgggatacaaggaaaaataagcaaaacaatgcctcaaataggatggcatttcatcatagcttaattttaatgcaggtaaaataccacctttcttt 145  Q
    |||||| ||||| | ||| ||||||||||| || ||||| ||||||||||||||||  |||||||| ||||||| ||||||||||||| || |||| |      
T  18125183 atctttaggataaagggagaaataagcaaagcattgccttaaataggatggcatttggtcatagctcaattttagtgcaggtaaaatatcatctttttgc 18125282  T
Q  146 tgttctaagttccaaatctcatggtctcttacgaatatccacttatttaatttaaatcaaattttgagaatagagaacttcctaatgttttgacagccag 245  Q
    |||| ||| ||||| | ||||   |||||||| ||||||||     |  |||||||||||||||||||||||| ||||||||||||||| | ||||| ||    
T  18125283 tgttttaaattccacagctcagaatctcttacaaatatcca-----tgtatttaaatcaaattttgagaatagggaacttcctaatgttctaacagctag 18125377  T
Q  246 cggaac 251  Q
     |||||    
T  18125378 tggaac 18125383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 46 - 175
Target Start/End: Original strand, 18117530 - 18117659
Alignment:
Q  46 atctttgggatacaaggaaaaataagcaaaacaatgcctcaaataggatggcatttcatcatagcttaattttaatgcaggtaaaataccacctttcttt 145  Q
    ||||||||||||||  | ||  |||||||| || ||||| |||||||||||||||| ||||||||||||||||| ||||||||||||| ||  || ||||    
T  18117530 atctttgggatacatagcaatgtaagcaaagcagtgccttaaataggatggcattttatcatagcttaattttagtgcaggtaaaatatcattttgcttt 18117629  T
Q  146 tgttctaagttccaaatctcatggtctctt 175  Q
    ||||||||  |||| ||||||  |||||||    
T  18117630 tgttctaaagtccacatctcagagtctctt 18117659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 43 - 147
Target Start/End: Complemental strand, 26329244 - 26329140
Alignment:
Q  43 ataatctttgggatacaaggaaaaataagcaaaacaatgcctcaaataggatggcatttcatcatagcttaattttaatgcaggtaaaataccacctttc 142  Q
    ||||||||||||| | | ||||||||||||||||||||| ||||||||||||||||||| |||||||||||| || |   ||||||||||| || ||||     
T  26329244 ataatctttgggaaaaagggaaaaataagcaaaacaatgtctcaaataggatggcatttgatcatagcttaacttaagcacaggtaaaatatcatctttg 26329145  T
Q  143 ttttg 147  Q
    |||||    
T  26329144 ttttg 26329140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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