View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0896_low_48 (Length: 250)
Name: NF0896_low_48
Description: NF0896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0896_low_48 |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 8 - 235
Target Start/End: Original strand, 49698446 - 49698673
Alignment:
| Q |
8 |
gagatgaagcaattaacaccatacaataccacacaaattccatctccagagaattaataaagaagctagtgttgcatggtgattaatcatataatgattg |
107 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
49698446 |
gagaagaagcaattaacaccatacaataccacacaaattccatctccagagaattaataaagaagctggtgttgcatggtgattaatcatataatgattg |
49698545 |
T |
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| Q |
108 |
aacaaagttagctagcttcataaaaaccgtagacgtacaatcgtgacattaagaaatttcattgaaacattgttactaatccctacggtgtgcaaaaatg |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
49698546 |
aacaaagttagctagcttcataaaaaccgtagacgtacaatcgtgacattaagaaatttcattgaaacattgttactaatctctacggtgtgcaaaaatg |
49698645 |
T |
|
| Q |
208 |
atgtatgaaagccacaacgatgatgatg |
235 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
49698646 |
atgtatgaaagccacaacgatgatgatg |
49698673 |
T |
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