View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0896_low_6 (Length: 543)
Name: NF0896_low_6
Description: NF0896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0896_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 482; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 33 - 530
Target Start/End: Complemental strand, 5685895 - 5685398
Alignment:
| Q |
33 |
actcatgatatacattctgtgggacaatcagacacagtacgaaacataaacttaaaagtgcacaaggacttatgtccaaatatcattcattatgtccgaa |
132 |
Q |
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| T |
5685895 |
actcatgatttacattatgtgggacaatcagacacagtacgaaacataaacttaaaagtgcacaaggatttatgtccaaatatcattcattatgtccgaa |
5685796 |
T |
|
| Q |
133 |
tatcactcatgatatacattctgtgggacaatcagacacagtacgaaacataaacttaaaagtgcacaaggacttatgtccaaatatcattcattatgtg |
232 |
Q |
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| T |
5685795 |
tatcactcatgatatacattctgtgggacaatcagacacagtacgaaacataaacttaaaagtgcacaaggacttatgtccaaatatcattcattatgtg |
5685696 |
T |
|
| Q |
233 |
aagccaatacaaatattaacataatttcaaatctgaactctccaatcttcaacttcctgagcacatatcacacattatatttttaatatcattccaaata |
332 |
Q |
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| T |
5685695 |
aagccaatacaaatattaacataatttcaaatctgaactctccaatcttcaacttcctgagcacatatcacacattatatttttaatatcattccaaata |
5685596 |
T |
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| Q |
333 |
ccaagagacatagacataaaactatattatgcaaatgaataatgagatatcgatgcaagcttaattcatgagaataaatgcttatatttaatccttatcc |
432 |
Q |
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| T |
5685595 |
ccaagagacatagacataaaactatattatgcaaatgaataatgagatatcgatgcaagcttaattcatgagaataaatgcttatatttaatccttatcc |
5685496 |
T |
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| Q |
433 |
taacaaatcaattcaatttggctagtgacatcaaatgatcatagaccggtcacatgatatctaactaaccccgtcaaataaattacgcaatgtgagaa |
530 |
Q |
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| T |
5685495 |
taacaaatcaattcagtttggctagtgacatcaaatgatcatagaccggtcacatgatatctaactaaccccgtcaaataaattacgcaatgtgagaa |
5685398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 5685823 - 5685697
Alignment:
| Q |
1 |
tgtccaaatatcattcattatgtccgaatatcactcatgatatacattctgtgggacaatcagacacagtacgaaacataaacttaaaagtgcacaagga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5685823 |
tgtccaaatatcattcattatgtccgaatatcactcatgatatacattctgtgggacaatcagacacagtacgaaacataaacttaaaagtgcacaagga |
5685724 |
T |
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| Q |
101 |
cttatgtccaaatatcattcattatgt |
127 |
Q |
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| T |
5685723 |
cttatgtccaaatatcattcattatgt |
5685697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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