View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0896_low_7 (Length: 534)
Name: NF0896_low_7
Description: NF0896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0896_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 433; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 1 - 464
Target Start/End: Original strand, 5391236 - 5391702
Alignment:
| Q |
1 |
aagataacttgtgggcgattagtgaaccatgtcattccttttttcttacccacctgaataaaaatatagttcatctaattatataatagt---gtatgtt |
97 |
Q |
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|||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
5391236 |
aagataacttgtggtcgattaatgaaccatgtcattccttttttcttacccacctgaataaaaatatagttcatctaattatataatagtagtgtatgtt |
5391335 |
T |
|
| Q |
98 |
gtgacgtattttattgacaataatttgtttgtttagtttaatttaccaacctcttctagcaagatatcctcttgtgtgtgatagaaattgggtgtgacaa |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5391336 |
gtgacgtattttattgacaataatttgtttgtttagtttaatttaccaacctcttctagcaagatatcctcttgtgtgtgatagaaattgggtgtgacaa |
5391435 |
T |
|
| Q |
198 |
ggcgtggcacatcctccgtgaaaggggactcatggggcttgatcttaccgactatttcaaaggatccaaagtagtgcttgattcccgtctgaagggatac |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |
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| T |
5391436 |
ggcgtggcacatcctccgtgaaaggggactcatggggcttgatcttaccgactatttcaaaggatccaaagtagtgcttgattcccgtttgaagggacac |
5391535 |
T |
|
| Q |
298 |
atgacaaagattcagagtatttgggatgagggctcgaaggacgttccttaacattgaaccgttaacttcgcagttttgagcctctgtgggcatgctggtc |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
5391536 |
atgacaaagattcagagtatttgggatgagggctcgaaggacgttccttaacattgaaccgttaactttgcagttttgagcctctgtgggcatgctggtc |
5391635 |
T |
|
| Q |
398 |
cacgagacatagaaaatatgtgtcacatcagttaagggagagagcttcaattcaacgtctttttgat |
464 |
Q |
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| T |
5391636 |
cacgagacatagaaaatatgtgtcacatcagttaagggagagagcttcaattcaacgtctttttgat |
5391702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 142 - 462
Target Start/End: Original strand, 5395191 - 5395511
Alignment:
| Q |
142 |
accaacctcttctagcaagatatcctcttgtgtgtgatagaaattgggtgtgacaaggcgtggcacatcctccgtgaaaggggactcatggggcttgatc |
241 |
Q |
| |
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|||||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |
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| T |
5395191 |
accaacctcttctaacaagatatcctcctgtgtgtaatagaaattgggtgtgacaaggcgtggcacatcctccgtgaagggggactcatgggccttgatc |
5395290 |
T |
|
| Q |
242 |
ttaccgactatttcaaaggatccaaagtagtgcttgattcccgtctgaagggatacatgacaaagattcagagtatttgggatgagggctcgaaggacgt |
341 |
Q |
| |
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||||||| |||| |||||||| | ||||||||| |||| || |||||||| ||||| |||||||| ||||||||||||||||||||||||||||||| |
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| T |
5395291 |
ttaccgatcgtttcgaaggatcctaggtagtgcttagttcctgtttgaagggacacatggcaaagattgagagtatttgggatgagggctcgaaggacgt |
5395390 |
T |
|
| Q |
342 |
tccttaacattgaaccgttaacttcgcagttttgagcctctgtgggcatgctggtccacgagacatagaaaatatgtgtcacatcagttaagggagagag |
441 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5395391 |
tccttaacattgaaccgttaacttcgcagttttgagcctctgtaggcatgctggtccacgagacatagaaaatatgtgtcacatcagttaagggagagag |
5395490 |
T |
|
| Q |
442 |
cttcaattcaacgtctttttg |
462 |
Q |
| |
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||||||||| ||||||||||| |
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| T |
5395491 |
cttcaattcgacgtctttttg |
5395511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 145 - 464
Target Start/End: Original strand, 5401341 - 5401660
Alignment:
| Q |
145 |
aacctcttctagcaagatatcctcttgtgtgtgatagaaattgggtgtgacaaggcgtggcacatcctccgtgaaaggggactcatggggcttgatctta |
244 |
Q |
| |
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||||||||| | ||||||||||||| ||||| |||||||||||||||| | ||||||||||||||||| ||||| ||||||||||| || ||||||||| |
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| T |
5401341 |
aacctcttcgaacaagatatcctctaatgtgtaatagaaattgggtgtgtcgaggcgtggcacatcctctgtgaagggggactcatgaggtttgatctta |
5401440 |
T |
|
| Q |
245 |
ccgactatttcaaaggatccaaagtagtgcttgattcccgtctgaagggatacatgacaaagattcagagtatttgggatgagggctcgaaggacgttcc |
344 |
Q |
| |
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|||| ||||| |||| ||| | ||||||||| || |||||||| || ||||| ||||||| ||| ||||||||| |||||| |||||||||||| |
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| T |
5401441 |
ccgatgatttcgaagggtcctacatagtgcttggcaccagtctgaagagacacatgggaaagatttggagcatttgggattagggcttgaaggacgttcc |
5401540 |
T |
|
| Q |
345 |
ttaacattgaaccgttaacttcgcagttttgagcctctgtgggcatgctggtccacgagacatagaaaatatgtgtcacatcagttaagggagagagctt |
444 |
Q |
| |
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| ||||| | ||| || || || || ||||||||||| ||||| |||||||||||||||||||||| ||||| ||||| || ||||| || || ||||| |
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| T |
5401541 |
tcaacatggcaccattcacctcacaattttgagcctccgtgggtctgctggtccacgagacatagaatatatgggtcacgtctgttaaaggggatagctt |
5401640 |
T |
|
| Q |
445 |
caattcaacgtctttttgat |
464 |
Q |
| |
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||||||||| || ||||||| |
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| T |
5401641 |
caattcaacatcgttttgat |
5401660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 10 - 96
Target Start/End: Original strand, 5394783 - 5394869
Alignment:
| Q |
10 |
tgtgggcgattagtgaaccatgtcattccttttttcttacccacctgaataaaaatatagttcatctaattatataatagtgtatgt |
96 |
Q |
| |
|
||||| |||||| ||||||||||| |||||||||||||||||||||||| ||| |||| |||||| ||||||||||||| ||||||| |
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| T |
5394783 |
tgtggtcgattaatgaaccatgtcgttccttttttcttacccacctgaacaaatatattgttcatttaattatataataatgtatgt |
5394869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 5399955 - 5400017
Alignment:
| Q |
1 |
aagataacttgtgggcgattagtgaaccatgtcattccttttttcttacccacctgaataaaa |
63 |
Q |
| |
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|||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||| |
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| T |
5399955 |
aagataacttgtggtcgattaatgaaccatgtcgttccttttttcttacccacctgaataaaa |
5400017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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