View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0896_low_8 (Length: 514)
Name: NF0896_low_8
Description: NF0896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0896_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 479
Target Start/End: Complemental strand, 18445570 - 18445097
Alignment:
| Q |
1 |
tcatgacactatcttaattttgtgcagcatatagtaacgatgaaaatagtctgatgtatatgatattaaaaaattttattcaattaactttcattttgtt |
100 |
Q |
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| T |
18445570 |
tcatgatactatcttaaatttgtgcagcatataataacgatgaaaatagactgatgtatatgatattaatattttttattcaattaactttcattttgtt |
18445471 |
T |
|
| Q |
101 |
gcaggtagagaaaaatggcattgataacgaatacgttcctggaatcactacttcgaagtatctgataaataagcttcgggaacttgctaaagtgggaaca |
200 |
Q |
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| T |
18445470 |
gcaggtagagaaaaatggcattgataatgaatacgttccaggaattactacttcgaagtatctgataaataagcttcgggaacttgctaaagtgggaaca |
18445371 |
T |
|
| Q |
201 |
tataaggttgtatatattgtgtttatttgatttcttttaaatatccatatgtcaatgtcaatgatatttcatcagtgataattcattctttactctctct |
300 |
Q |
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| T |
18445370 |
tacaaggttgtatatattacgtttatttgatttcttttccatatccatatgtcaatgtcaatgatatttcatcagtgataattcattcttta----ctct |
18445275 |
T |
|
| Q |
301 |
tgattgnnnnnnnnnnttatgagacgattagtttaccaatatcatcaccgaagaaatctagtaatatagaagggaaatgaagctacagttttcattttca |
400 |
Q |
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|| ||| ||||||| ||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
18445274 |
tgtttgaaaaaaaaaa-aatgagacaattggtttaccaatatcaccaccgcagaaatctagtaatatagaagggaaatgaagctacaattttcattttca |
18445176 |
T |
|
| Q |
401 |
tcgtgttatcttagtgtttgtattagaatttgggttaagtctaactcaacaaaacaaaatcgatttgtaagatgatgat |
479 |
Q |
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| T |
18445175 |
tcgtgttattttagtgtttgtattagaatttgggttaagtctaactcaacaaaacaaaatcgatttgtaagatgatgat |
18445097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 427 - 475
Target Start/End: Original strand, 1348881 - 1348929
Alignment:
| Q |
427 |
aatttgggttaagtctaactcaacaaaacaaaatcgatttgtaagatga |
475 |
Q |
| |
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|||||||||| ||||||||||||| | |||||| |||||||| |||||| |
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| T |
1348881 |
aatttgggttgagtctaactcaaccatacaaaaccgatttgtgagatga |
1348929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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