View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0897_low_1 (Length: 390)
Name: NF0897_low_1
Description: NF0897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0897_low_1 |
 | |
|
| [»] scaffold0029 (2 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 22 - 377
Target Start/End: Complemental strand, 28961407 - 28961052
Alignment:
| Q |
22 |
catcatcaccatccacaccatcctcctcctcatctctatcgaccggataaggctcaacattgggacttaaaaccggcgagggatcttgagcttgtgcttg |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28961407 |
catcatcaccatccacaccatcctcctcctcatctctatcgaccggataaggctcaacattgggacttaaaaccggcgagggatcttgagcttgtgcttg |
28961308 |
T |
|
| Q |
122 |
cctaaattgagtgagctgctcctcataagatctttggcggttgagcaaatcttgcacaacagccgcttgagtcgccatctgctgcgcgaattgctcttgt |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28961307 |
cctaaattgagtgagctgctcctcataagatctttggcggttgagcaaatcttgcacaacagccgcttgagtcgccatctgctgcgcgaattgctcttgt |
28961208 |
T |
|
| Q |
222 |
gccaatctattaataagctcccgcatctctggcgtcagctcaggctgccgggaagatccttcaccatgattgagcgtaaatgtgagcgttgatgcaacac |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28961207 |
gccaatctattaataagctcccgcatctctggcgtcagctcaggctaccgggaagatccttcaccatgattgagcgtaaatgtgagcgttgatgcaacac |
28961108 |
T |
|
| Q |
322 |
tacccgcccgatagttagcagccaagttaccaagaccgtagagcttccctttcttc |
377 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28961107 |
tacccgcccgatagttagcagccaagttaccaagaccgtagagcttccctttcttc |
28961052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 317; Significance: 1e-179; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 22 - 377
Target Start/End: Original strand, 5020289 - 5020642
Alignment:
| Q |
22 |
catcatcaccatccacaccatcctcctcctcatctctatcgaccggataaggctcaacattgggacttaaaaccggcgagggatcttgagcttgtgcttg |
121 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5020289 |
catcatcatcatccacaccatcctcttcctcatctctatcgaccggataaggctcaacattgggacttaaaaccggcgagggatcttgagcttgtgcttg |
5020388 |
T |
|
| Q |
122 |
cctaaattgagtgagctgctcctcataagatctttggcggttgagcaaatcttgcacaacagccgcttgagtcgccatctgctgcgcgaattgctcttgt |
221 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5020389 |
cctaaattgagcgagctgctcctcataagatctttggcggttgagcaaatcttgcacaacagccgcttgagtcgccatctgctgcgcgaattgctcttgt |
5020488 |
T |
|
| Q |
222 |
gccaatctattaataagctcccgcatctctggcgtcagctcaggctgccgggaagatccttcaccatgattgagcgtaaatgtgagcgttgatgcaacac |
321 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5020489 |
gccaatctatgaataagctcccgcatctctggcgtcagct--ggctgccgggaagatccttcaccatgattgagcgtaaatgtgagcgttgatgcaacac |
5020586 |
T |
|
| Q |
322 |
tacccgcccgatagttagcagccaagttaccaagaccgtagagcttccctttcttc |
377 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
5020587 |
tacccgcccgatagttagcggccaagttaccaagaccatagagctttcctttcttc |
5020642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 22 - 377
Target Start/End: Original strand, 22122092 - 22122448
Alignment:
| Q |
22 |
catcatcaccatccacaccatcctcctcctcatctctatcgaccggataaggctcaacattgggacttaaaaccggcgagggatcttgagcttgtgcttg |
121 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
22122092 |
catcatcatcatccacaccatcctcctcctcatctctatcgaccgaataaggctcaacattgggacttaaaatcggcgagggatcttgagcctgtgcttg |
22122191 |
T |
|
| Q |
122 |
cctaaattgagtgagctgctcctcataagatctttggcggttgagcaaatcttgcacaacagccgcttgagtcgccatctgctgcgcgaattgctcttgt |
221 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
22122192 |
cctaaattgagcgagctgctcctcataagatctttggcggttgagcaaatcttgcacaacagccgcttgagtcgccatctactgcgcgaattgctcttgt |
22122291 |
T |
|
| Q |
222 |
gccaatctattaataagctcccgcatctctggcgtcagctcaggctgccgggaagatccttcaccatgattgagcgtaaatgtgagcgttgatgcaacac |
321 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22122292 |
gccaatctatgaataagctcccgcatctctggcgtcagctcaggctgccgagaggatccttcaccatgattgagcgtaaatgtgagcgttgatgcaacac |
22122391 |
T |
|
| Q |
322 |
tacccgcccgatagttagcagccaagttaccaagaccgtagagc-ttccctttcttc |
377 |
Q |
| |
|
|||||||| |||||||||| ||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
22122392 |
tacccgccagatagttagcggccaagttaccaagaccatagagctttccctttcttc |
22122448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 26 - 377
Target Start/End: Complemental strand, 34631312 - 34630961
Alignment:
| Q |
26 |
atcaccatccacaccatcctcctcctcatctctatcgaccggataaggctcaacattgggacttaaaaccggcgagggatcttgagcttgtgcttgccta |
125 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |
|
|
| T |
34631312 |
atcatcatccacaccatcctcctcctcatctgtatcgaccggataaggctcaacattgggacttaaaatcggcgagggatcttgagcctgtgcttgccta |
34631213 |
T |
|
| Q |
126 |
aattgagtgagctgctcctcataagatctttggcggttgagcaaatcttgcacaacagccgcttgagtcgccatctgctgcgcgaattgctcttgtgcca |
225 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
34631212 |
aattgagcgagctgctcctcataagatctttggcggttgagcaaatcttgcacaaaagccgcttgagtcgccatatgctgcgcgaattgctcttgtgcca |
34631113 |
T |
|
| Q |
226 |
atctattaataagctcccgcatctctggcgtcagctcaggctgccgggaagatccttcaccatgattgagcgtaaatgtgagcgttgatgcaacactacc |
325 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
34631112 |
atctatttataagctcccgcatctctggcgtcagctcaggctgccgggaggatccttcaccatgattgagcgtaaatgtgagcgttgattcaacactacc |
34631013 |
T |
|
| Q |
326 |
cgcccgatagttagcagccaagttaccaagaccgtagagcttccctttcttc |
377 |
Q |
| |
|
|| |||||||||||| ||||||||||||||||| |||||||| || |||||| |
|
|
| T |
34631012 |
cggccgatagttagcggccaagttaccaagaccatagagcttacccttcttc |
34630961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 41 - 377
Target Start/End: Complemental strand, 34371521 - 34371185
Alignment:
| Q |
41 |
atcctcctcctcatctctatcgaccggataaggctcaacattgggacttaaaaccggcgagggatcttgagcttgtgcttgcctaaattgagtgagctgc |
140 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
34371521 |
atcctcctcctcatctctatcgaccggataaggctcaacattgagacttaaaaccggcgagggatcttgagcctgtgcttgcctaaattgagcgagctgc |
34371422 |
T |
|
| Q |
141 |
tcctcataagatctttggcggttgagcaaatcttgcacaacagccgcttgagtcgccatctgctgcgcgaattgctcttgtgccaatctattaataagct |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||| ||||||||||| |||||||| |
|
|
| T |
34371421 |
tcctcataagatctttggcggttgagcaaatcttgcacaatagccgcttgagtcgccatctgctgcgcaaatttctcttttgccaatctatgaataagct |
34371322 |
T |
|
| Q |
241 |
cccgcatctctggcgtcagctcaggctgccgggaagatccttcaccatgattgagcgtaaatgtgagcgttgatgcaacactacccgcccgatagttagc |
340 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
34371321 |
cccgcatctttggcgtcagctcaggctgccaggaggatccttcaccatgattgagcgtaaatgtgagtgttgatgcaacactacccgcccgatagttagc |
34371222 |
T |
|
| Q |
341 |
agccaagttaccaagaccgtagagcttccctttcttc |
377 |
Q |
| |
|
||||||||||||||||| |||||||| || |||||| |
|
|
| T |
34371221 |
ggccaagttaccaagaccatagagctttcccttcttc |
34371185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 321
Target Start/End: Original strand, 40542707 - 40542913
Alignment:
| Q |
115 |
gtgcttgcctaaattgagtgagctgctcctcataagatctttggcggttgagcaaatcttgcacaacagccgcttgagtcgccatctgctgcgcgaattg |
214 |
Q |
| |
|
||||||||||||| ||||| || ||||||||||| || ||| ||| | ||||||||||||||||| ||| | ||| ||||||| || || | || || |
|
|
| T |
40542707 |
gtgcttgcctaaactgagtcagttgctcctcatattttcgttgtcggctaagcaaatcttgcacaacggcctcgtgactcgccatttgttgtgtgagctg |
40542806 |
T |
|
| Q |
215 |
ctcttgtgccaatctattaataagctcccgcatctctggcgtcagctcaggctgccgggaagatccttcaccatgattgagcgtaaatgtgagcgttgat |
314 |
Q |
| |
|
|||||| | |||||| | |||||| || | ||| || | ||||| ||||||| || | ||||||||||||||||| || |||| | |||| |||| | |
|
|
| T |
40542807 |
ctcttgagtcaatctttgaataaggtcacacatttcagaggtcagtgcaggctgttggaaggatccttcaccatgattaagggtaagtctgagagttgct |
40542906 |
T |
|
| Q |
315 |
gcaacac |
321 |
Q |
| |
|
||||||| |
|
|
| T |
40542907 |
gcaacac |
40542913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 22 - 377
Target Start/End: Original strand, 5598265 - 5598620
Alignment:
| Q |
22 |
catcatcaccatccacaccatcctcctcctcatctctatcgaccggataaggctcaacattgggacttaaaaccggcgagggatcttgagcttgtgcttg |
121 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
5598265 |
catcatcatcatccacaccatcctcctcctcatctctatcgaccggataaggctcaatattgggacttaaaaccagcgagggatcttgagcctgtgcttg |
5598364 |
T |
|
| Q |
122 |
cctaaattgagtgagctgctcctcataagatctttggcggttgagcaaatcttgcacaacagccgcttgagtcgccatctgctgcgcgaattgctcttgt |
221 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5598365 |
cctaaattgagcgagctgctcctcataagatctttggcggttgagcaaatcttgcacaacagccgcttgagtcgccatctgctgcgcgaattgctcttgt |
5598464 |
T |
|
| Q |
222 |
gccaatctattaataagctcccgcatctctggcgtcagctcaggctgccgggaagatccttcaccatgattgagcgtaaatgtgagcgttgatgcaacac |
321 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
5598465 |
gccaatctatgaataagctcccgcatctctggcgttagctcaggctgccgggaggatccttcaccatgattgagcgtaaatgtgagtgttgatgcaacac |
5598564 |
T |
|
| Q |
322 |
tacccgcccgatagttagcagccaagttaccaagaccgtagagcttccctttcttc |
377 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
5598565 |
tacccgcccgatagttagcggccaagttaccaagaccatagagctttcctttcttc |
5598620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 22 - 377
Target Start/End: Complemental strand, 7626628 - 7626273
Alignment:
| Q |
22 |
catcatcaccatccacaccatcctcctcctcatctctatcgaccggataaggctcaacattgggacttaaaaccggcgagggatcttgagcttgtgcttg |
121 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
7626628 |
catcatcattatccacaccatcctcctcctcatctctatcgaccggataaggctcaacattgggacttaaaatcggcgagggatcttgagcctgtgcttg |
7626529 |
T |
|
| Q |
122 |
cctaaattgagtgagctgctcctcataagatctttggcggttgagcaaatcttgcacaacagccgcttgagtcgccatctgctgcgcgaattgctcttgt |
221 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7626528 |
cctaaattgagcgagctgctcctcataagatctttggcggttgagcaaatcttgcacaacagccgcttgagtcgccatctgctgcgcgaattgctcttgt |
7626429 |
T |
|
| Q |
222 |
gccaatctattaataagctcccgcatctctggcgtcagctcaggctgccgggaagatccttcaccatgattgagcgtaaatgtgagcgttgatgcaacac |
321 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
7626428 |
gccaatctatttataagctcccgcatctctggcgtcagctcaggctgtcgggaggatccttcaccatgattgagcgtaaatgtgagcgttgattcaacac |
7626329 |
T |
|
| Q |
322 |
tacccgcccgatagttagcagccaagttaccaagaccgtagagcttccctttcttc |
377 |
Q |
| |
|
|||||| |||| ||||||| ||||||||||||||||| ||||| || || |||||| |
|
|
| T |
7626328 |
tacccggccgacagttagcggccaagttaccaagaccatagagtttacccttcttc |
7626273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 99 - 377
Target Start/End: Complemental strand, 10998225 - 10997947
Alignment:
| Q |
99 |
gagggatcttgagcttgtgcttgcctaaattgagtgagctgctcctcataagatctttggcggttgagcaaatcttgcacaacagccgcttgagtcgcca |
198 |
Q |
| |
|
|||||| ||||||| ||||||||| ||| ||| || |||||||| || ||||||||||||| | || ||||||||||| || |||||| | |||| |
|
|
| T |
10998225 |
gagggagcttgagcctgtgcttgcgtaagccgagccagatgctcctcgtataatctttggcggttaatcatatcttgcacaagggctgcttgacttgcca |
10998126 |
T |
|
| Q |
199 |
tctgctgcgcgaattgctcttgtgccaatctattaataagctcccgcatctctggcgtcagctcaggctgccgggaagatccttcaccatgattgagcgt |
298 |
Q |
| |
|
||||||||| ||| |||||||||| |||||||| || |||||||||||||||||||||||||||||||||| |||| | ||||||||| |||||||| || |
|
|
| T |
10998125 |
tctgctgcgtgaactgctcttgtgtcaatctatgaaaaagctcccgcatctctggcgtcagctcaggctgctgggaggttccttcaccctgattgagggt |
10998026 |
T |
|
| Q |
299 |
aaatgtgagcgttgatgcaacactacccgcccgatagttagcagccaagttaccaagaccgtagagcttccctttcttc |
377 |
Q |
| |
|
| | |||| |||||||||||||||||| || |||||||| || |||||||||||||| |||||||| ||||||||| |
|
|
| T |
10998025 |
tagtctgagggttgatgcaacactaccctttcggtagttagcggctaagttaccaagaccatagagctttcctttcttc |
10997947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 138 - 321
Target Start/End: Original strand, 7781666 - 7781849
Alignment:
| Q |
138 |
tgctcctcataagatctttggcggttgagcaaatcttgcacaacagccgcttgagtcgccatctgctgcgcgaattgctcttgtgccaatctattaataa |
237 |
Q |
| |
|
||||||||||| | || ||||||| | || |||||||| ||||| ||| | || ||||||| ||||| | || |||||||| | |||||| | ||||| |
|
|
| T |
7781666 |
tgctcctcatatgttcgttggcggctaagaaaatcttgtacaacggcctcgtgtctcgccatttgctgggtgagctgctcttgagtcaatctttgaataa |
7781765 |
T |
|
| Q |
238 |
gctcccgcatctctggcgtcagctcaggctgccgggaagatccttcaccatgattgagcgtaaatgtgagcgttgatgcaacac |
321 |
Q |
| |
|
| || |||||||| || |||||| |||||||| |||| ||||||||||||||||| || |||||| |||| |||| |||||||| |
|
|
| T |
7781766 |
ggtcacgcatctcaggggtcagcgcaggctgctgggaggatccttcaccatgattaagggtaaatctgagggttgttgcaacac |
7781849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 99
Target Start/End: Original strand, 51269302 - 51269334
Alignment:
| Q |
67 |
gataaggctcaacattgggacttaaaaccggcg |
99 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |
|
|
| T |
51269302 |
gataaggctcaacattcggacttaaaaccggcg |
51269334 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 136; Significance: 8e-71; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 40 - 300
Target Start/End: Original strand, 6052409 - 6052681
Alignment:
| Q |
40 |
catcctcctcctcatctctatcgaccggataaggctcaacattgggacttaaaaccggcg------------agggatcttgagcttgtgcttgcctaaa |
127 |
Q |
| |
|
|||| ||||||||||||||||| || |||||||||||||||||||||||||||| | ||| ||||||||||||| |||||||||||||| |
|
|
| T |
6052409 |
catcatcctcctcatctctatcaactggataaggctcaacattgggacttaaaaacagcgctctagtgtgggagggatcttgagcatgtgcttgcctaaa |
6052508 |
T |
|
| Q |
128 |
ttgagtgagctgctcctcataagatctttggcggttgagcaaatcttgcacaacagccgcttgagtcgccatctgctgcgcgaattgctcttgtgccaat |
227 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||| |||||||||||| |||| ||||||||| ||||||| ||||||||| | |||||||||| |||| |
|
|
| T |
6052509 |
ctgagccagctgctcctcatatgatctttggcggttaagcaaatcttgctcaacggccgcttgactcgccatttgctgcgcggactgctcttgtgtcaat |
6052608 |
T |
|
| Q |
228 |
ctattaataagctcccgcatctctggcgtcagctcaggctgccgggaagatccttcaccatgattgagcgtaa |
300 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||| |||| |
|
|
| T |
6052609 |
ctatgaataagctcccgcatctctggggtcagctcaggctgctgggagaatccttcaccatgattgagggtaa |
6052681 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 99 - 377
Target Start/End: Original strand, 7430377 - 7430655
Alignment:
| Q |
99 |
gagggatcttgagcttgtgcttgcctaaattgagtgagctgctcctcataagatctttggcggttgagcaaatcttgcacaacagccgcttgagtcgcca |
198 |
Q |
| |
|
|||||||||||||| ||||||||| ||| ||| ||||||||||| || ||||||||||||| | ||||| |||||||| ||||||||| |||||| |
|
|
| T |
7430377 |
gagggatcttgagcctgtgcttgcgtaagccgagccagctgctcctcgtataatctttggcggttaatcaaatattgcacaagggccgcttgactcgcca |
7430476 |
T |
|
| Q |
199 |
tctgctgcgcgaattgctcttgtgccaatctattaataagctcccgcatctctggcgtcagctcaggctgccgggaagatccttcaccatgattgagcgt |
298 |
Q |
| |
|
||||||||| ||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||| || |
|
|
| T |
7430477 |
tctgctgcgtgaactgctcttgtgtcaatctatgaataagctcccgcatctctggcgtcagctcaggctgctgggaggttccttcaccatgattgagggt |
7430576 |
T |
|
| Q |
299 |
aaatgtgagcgttgatgcaacactacccgcccgatagttagcagccaagttaccaagaccgtagagcttccctttcttc |
377 |
Q |
| |
|
| | |||| ||||||||||||||| ||| ||| ||||||||||| ||||||||| || | |||||||| ||||||||| |
|
|
| T |
7430577 |
tagtctgagggttgatgcaacactatccgtccggtagttagcagctaagttaccacgaacatagagctttcctttcttc |
7430655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 66 - 377
Target Start/End: Complemental strand, 14606759 - 14606438
Alignment:
| Q |
66 |
ggataaggctcaacattgggacttaaaaccggcg----------agggatcttgagcttgtgcttgcctaaattgagtgagctgctcctcataagatctt |
155 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |||| ||||||||||| || |||||| |
|
|
| T |
14606759 |
ggataaggctcaacattgggacttaaaaccggcgctctagtgggagggatcttgagcctgtgcttgcctaagctgagccagctgctcctcgtatgatctt |
14606660 |
T |
|
| Q |
156 |
tggcggttgagcaaatcttgcacaacagccgcttgagtcgccatctgctgcgcgaattgctcttgtgccaatctattaataagctcccgcatctctggcg |
255 |
Q |
| |
|
||| |||| ||||||||| ||||| | ||||||| | ||||||||||||| ||| |||||||||| |||||||| ||||||||||||||||||||| | |
|
|
| T |
14606659 |
tggaggttaagcaaatctgccacaagggtcgcttgacttgccatctgctgcgtgaactgctcttgtgtcaatctatgaataagctcccgcatctctggtg |
14606560 |
T |
|
| Q |
256 |
tcagctcaggctgccgggaagatccttcaccatgattgagcgtaaatgtgagcgttgatgcaacactacccgcccgatagttagcagccaagttaccaag |
355 |
Q |
| |
|
|||||||| ||||| |||| |||||||||||||||||||| || | | |||| ||||||||||||||| || ||| |||||||| || ||||| ||||| |
|
|
| T |
14606559 |
tcagctcatgctgctgggaggatccttcaccatgattgagggttagtctgagggttgatgcaacactatccttccggtagttagcggctaagtttccaag |
14606460 |
T |
|
| Q |
356 |
accgtagagcttccctttcttc |
377 |
Q |
| |
|
||| |||||||| ||||||||| |
|
|
| T |
14606459 |
accatagagctttcctttcttc |
14606438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0029 (Bit Score: 115; Significance: 3e-58; HSPs: 2)
Name: scaffold0029
Description:
Target: scaffold0029; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 99 - 377
Target Start/End: Original strand, 52784 - 53062
Alignment:
| Q |
99 |
gagggatcttgagcttgtgcttgcctaaattgagtgagctgctcctcataagatctttggcggttgagcaaatcttgcacaacagccgcttgagtcgcca |
198 |
Q |
| |
|
|||||| ||||| | ||||||||| ||| | |||| ||||||||||| || ||||||||||||| | ||| |||||||||| || |||||| | |||| |
|
|
| T |
52784 |
gagggagcttgatcctgtgcttgcataagtcgagtcagctgctcctcgtataatctttggcggttaatcaattcttgcacaagggctgcttgacttgcca |
52883 |
T |
|
| Q |
199 |
tctgctgcgcgaattgctcttgtgccaatctattaataagctcccgcatctctggcgtcagctcaggctgccgggaagatccttcaccatgattgagcgt |
298 |
Q |
| |
|
||||||||| ||| |||||||||| |||||||| ||| ||||||||||||||||||||||||| ||||||| |||| | ||||||||| |||||||| || |
|
|
| T |
52884 |
tctgctgcgagaactgctcttgtgacaatctatgaatgagctcccgcatctctggcgtcagctgaggctgctgggaggttccttcaccctgattgagggt |
52983 |
T |
|
| Q |
299 |
aaatgtgagcgttgatgcaacactacccgcccgatagttagcagccaagttaccaagaccgtagagcttccctttcttc |
377 |
Q |
| |
|
| | |||| |||||||||||||| ||| |||||||||||| || ||||||||||| || |||||||| ||||||||| |
|
|
| T |
52984 |
tagtctgagggttgatgcaacacttcccttccgatagttagcggctaagttaccaaggccatagagctttcctttcttc |
53062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0029; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 99
Target Start/End: Original strand, 52739 - 52772
Alignment:
| Q |
66 |
ggataaggctcaacattgggacttaaaaccggcg |
99 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |
|
|
| T |
52739 |
ggataaggctcaacattcggacttaaaaccggcg |
52772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 99 - 377
Target Start/End: Complemental strand, 22016137 - 22015859
Alignment:
| Q |
99 |
gagggatcttgagcttgtgcttgcctaaattgagtgagctgctcctcataagatctttggcggttgagcaaatcttgcacaacagccgcttgagtcgcca |
198 |
Q |
| |
|
|||||| ||||||| ||||||||| ||| ||| ||||||||||| || |||||||| |||| | |||||||||||||| | |||||| | ||| |
|
|
| T |
22016137 |
gagggagcttgagcctgtgcttgcgtaagccgagccagctgctcctcgtataatctttggtggttaatcaaatcttgcacaagggatgcttgactttcca |
22016038 |
T |
|
| Q |
199 |
tctgctgcgcgaattgctcttgtgccaatctattaataagctcccgcatctctggcgtcagctcaggctgccgggaagatccttcaccatgattgagcgt |
298 |
Q |
| |
|
||||||| | ||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||| | ||||||||| |||||||| || |
|
|
| T |
22016037 |
tctgctgtgtgaactgctcttgtgtcaatctatgaataagctcccgcatctctggcgtcagctcaggctgctgggaggttccttcaccctgattgagggt |
22015938 |
T |
|
| Q |
299 |
aaatgtgagcgttgatgcaacactacccgcccgatagttagcagccaagttaccaagaccgtagagcttccctttcttc |
377 |
Q |
| |
|
| | |||| |||||||||||||| ||| ||| |||||||| || |||||||||||||| |||||||| ||||||||| |
|
|
| T |
22015937 |
tagtctgagggttgatgcaacactgcccttccggtagttagcggctaagttaccaagaccatagagctttcctttcttc |
22015859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 107; Significance: 2e-53; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 99 - 377
Target Start/End: Complemental strand, 44326245 - 44325967
Alignment:
| Q |
99 |
gagggatcttgagcttgtgcttgcctaaattgagtgagctgctcctcataagatctttggcggttgagcaaatcttgcacaacagccgcttgagtcgcca |
198 |
Q |
| |
|
|||||| ||||||| ||||||||| ||| ||| ||||||||||| || |||||||| |||| | |||||||||||||| | |||||| | ||| |
|
|
| T |
44326245 |
gagggagcttgagcctgtgcttgcgtaagccgagccagctgctcctcgtataatctttggtggttaatcaaatcttgcacaagggatgcttgactttcca |
44326146 |
T |
|
| Q |
199 |
tctgctgcgcgaattgctcttgtgccaatctattaataagctcccgcatctctggcgtcagctcaggctgccgggaagatccttcaccatgattgagcgt |
298 |
Q |
| |
|
||||||| | ||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||| | ||||||||| |||||||| || |
|
|
| T |
44326145 |
tctgctgtgtgaactgctcttgtgtcaatctatgaataagctcccgcatctctggcgtcagctcaggctgctgggaggttccttcaccctgattgagggt |
44326046 |
T |
|
| Q |
299 |
aaatgtgagcgttgatgcaacactacccgcccgatagttagcagccaagttaccaagaccgtagagcttccctttcttc |
377 |
Q |
| |
|
| | |||| |||||||||||||| ||| ||| |||||||| || |||||||||||||| |||||||| ||||||||| |
|
|
| T |
44326045 |
tagtctgagggttgatgcaacactgcccttccggtagttagcggctaagttaccaagaccatagagctttcctttcttc |
44325967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 114 - 352
Target Start/End: Original strand, 6659819 - 6660054
Alignment:
| Q |
114 |
tgtgcttgcctaaattgagtgagctgctcctcataagatctttggcggttgagcaaatcttgcacaacagccgcttgagtcgccatctgctgcgcgaatt |
213 |
Q |
| |
|
|||||||||| |||||||| | ||||||||||| | || ||||||| | ||||||||||| ||||| ||| | || ||||||| ||||| | || | |
|
|
| T |
6659819 |
tgtgcttgccgaaattgagccaattgctcctcatatgttcgttggcggctaagcaaatcttgtacaacggcctcatgtctcgccatttgctgggtgagct |
6659918 |
T |
|
| Q |
214 |
gctcttgtgccaatctattaataagctcccgcatctctggcgtcagctcaggctgccgggaagatccttcaccatgattgagcgtaaatgtgagcgttga |
313 |
Q |
| |
|
||||||| | |||||| | |||||| || |||||||| || ||||| |||||||| |||| |||||||| |||||||| || |||||| |||| |||| |
|
|
| T |
6659919 |
gctcttgagtcaatctttgaataaggtcacgcatctcaggggtcagtgcaggctgctgggaggatccttcgccatgattaagggtaaatctgagggttgt |
6660018 |
T |
|
| Q |
314 |
tgcaacactacccgcccgatagttagcagccaagttacc |
352 |
Q |
| |
|
|||||| |||| ||| |||||||| ||||||||||| |
|
|
| T |
6660019 |
tgcaac---acccttccggtagttagcggccaagttacc |
6660054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 114 - 321
Target Start/End: Complemental strand, 23450353 - 23450146
Alignment:
| Q |
114 |
tgtgcttgcctaaattgagtgagctgctcctcataagatctttggcggttgagcaaatcttgcacaacagccgcttgagtcgccatctgctgcgcgaatt |
213 |
Q |
| |
|
|||||||||| |||||||| || ||||||||||| | || ||||||| | ||||||||||| ||||| ||| | || ||||||| ||||| | || | |
|
|
| T |
23450353 |
tgtgcttgccgaaattgagccagttgctcctcatatgttcgttggcggctaagcaaatcttgtacaacggcctcatgtctcgccatttgctgggtgagct |
23450254 |
T |
|
| Q |
214 |
gctcttgtgccaatctattaataagctcccgcatctctggcgtcagctcaggctgccgggaagatccttcaccatgattgagcgtaaatgtgagcgttga |
313 |
Q |
| |
|
||||||| | |||||| | |||||| || ||||||| || ||||| |||||||| |||| |||||||| |||||||| || |||||| |||| |||| |
|
|
| T |
23450253 |
gctcttgagtcaatctttgaataaggtcatgcatctcaggggtcagtgcaggctgctgggaggatccttcgccatgattaagggtaaatctgagggttgt |
23450154 |
T |
|
| Q |
314 |
tgcaacac |
321 |
Q |
| |
|
|||||||| |
|
|
| T |
23450153 |
tgcaacac |
23450146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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