View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0897_low_4 (Length: 282)
Name: NF0897_low_4
Description: NF0897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0897_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 170; Significance: 3e-91; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 56 - 233
Target Start/End: Complemental strand, 36396234 - 36396057
Alignment:
| Q |
56 |
tcatcacaatggtagtgagcggtgattttatatacatacggagacaccgaagaggcgaccggaagtccatgcaggaatccttcagcaagcatagaaagcc |
155 |
Q |
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| T |
36396234 |
tcatcacaatggtagtgagcggtgattttatatacatacggagacaccgaagaggcgaccggaagtccatgcaggaatccttcagcaagcatagaaagcc |
36396135 |
T |
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| Q |
156 |
agagttcaaggaaaacagttcactgcgtttcgaaatgcgagtgacagggtgcaagataaggaaatgtgggtggcgtat |
233 |
Q |
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| T |
36396134 |
agagttcacggaaaacagttcactgcgtttcgaaatgcgagtgacagggtgcaagataagaaaatgtgggtggcgtat |
36396057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 59 - 233
Target Start/End: Complemental strand, 36404819 - 36404645
Alignment:
| Q |
59 |
tcacaatggtagtgagcggtgattttatatacatacggagacaccgaagaggcgaccggaagtccatgcaggaatcc-ttcagcaagcatagaaagccag |
157 |
Q |
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| T |
36404819 |
tcacactggtagtgagcggcgactttatatatattcagagacaccttagtggggacccaaagttcatgc-ggaagcaattcagcaagcacagaaagccag |
36404721 |
T |
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| Q |
158 |
agttcaaggaaaacagttcactgcgtttcgaaatgcgagtgacagggtgcaagataaggaaatgtgggtggcgtat |
233 |
Q |
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| T |
36404720 |
agttaagcgaaaacagttcattgcgttttgaagtacaagtggaagggtgcaagataaggaagtgtgggtggcgtat |
36404645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 59 - 189
Target Start/End: Complemental strand, 36388092 - 36387962
Alignment:
| Q |
59 |
tcacaatggtagtgagcggtgattttatatacatacggagacaccgaagaggcgaccggaagtccatgcaggaatccttcagcaagcatagaaagccaga |
158 |
Q |
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| T |
36388092 |
tcacaatggtagtgagtggtgattttatttacattcgaagacacctaagatgggatcagaagtccatgcgcgaatcctttagcaggcatcggaagccaga |
36387993 |
T |
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| Q |
159 |
gttcaaggaaaacagttcactgcgtttcgaa |
189 |
Q |
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| T |
36387992 |
gtttagggaaaactgtttgttgcgtttcgaa |
36387962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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