View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0897_low_5 (Length: 252)

Name: NF0897_low_5
Description: NF0897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0897_low_5
NF0897_low_5
[»] chr8 (2 HSPs)
chr8 (1-231)||(42609062-42609292)
chr8 (4-231)||(8590401-8590628)
[»] chr7 (3 HSPs)
chr7 (1-231)||(34830068-34830298)
chr7 (4-231)||(46485524-46485751)
chr7 (166-231)||(37171014-37171079)
[»] chr5 (8 HSPs)
chr5 (1-231)||(1380122-1380352)
chr5 (1-231)||(20086078-20086308)
chr5 (1-231)||(30825474-30825704)
chr5 (1-231)||(19421193-19421423)
chr5 (1-231)||(765488-765718)
chr5 (4-231)||(41374200-41374427)
chr5 (4-225)||(19680128-19680349)
chr5 (4-231)||(30663152-30663380)
[»] chr4 (4 HSPs)
chr4 (1-231)||(10229938-10230168)
chr4 (4-231)||(5058235-5058462)
chr4 (4-231)||(20173129-20173356)
chr4 (98-231)||(18379620-18379753)
[»] chr2 (9 HSPs)
chr2 (1-231)||(11746270-11746500)
chr2 (1-231)||(37018711-37018941)
chr2 (1-231)||(6900316-6900546)
chr2 (4-231)||(44333824-44334051)
chr2 (4-231)||(36627738-36627965)
chr2 (4-231)||(6004964-6005192)
chr2 (7-231)||(13721478-13721704)
chr2 (168-231)||(1736240-1736303)
chr2 (1-54)||(43803585-43803638)
[»] chr1 (2 HSPs)
chr1 (1-231)||(6410565-6410795)
chr1 (156-231)||(680958-681033)
[»] scaffold0170 (1 HSPs)
scaffold0170 (1-231)||(28170-28397)
[»] chr3 (3 HSPs)
chr3 (4-231)||(26522625-26522852)
chr3 (4-231)||(52607850-52608079)
chr3 (4-231)||(39196801-39197029)
[»] scaffold0504 (1 HSPs)
scaffold0504 (4-231)||(2944-3171)
[»] chr6 (4 HSPs)
chr6 (4-231)||(26335270-26335494)
chr6 (4-231)||(22023716-22023943)
chr6 (4-231)||(13048392-13048619)
chr6 (54-224)||(34677582-34677752)


Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 42609292 - 42609062
Alignment:
Q  1 ctaaagaagaaagttgaatgcatgggtaaaaatcatatctctttccacgtaaattcgacattttatttgtttaaaatgacacatctaacttttttcaaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42609292 ctaaagaagaaagttgaatgcatgggtaaaaatcatatctctttccacgtaaattcgacattttatttgtttaaaatgacacatctaacttttttcaaaa 42609193  T
Q  101 caatgcaggttacgccatgaacatccctacattcgaatactaccgttctgaaattgctgttgcagaccgaaaggctttagcatgggtcgacaatattccc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42609192 caatgcaggttacgccatgaacatccctacattcgaatactaccgttctgaaattgctgttgcagaccgaaaggctttagcatgggtcgacaatattccc 42609093  T
Q  201 aaacaaaagtggactcaatcacatgatgatg 231  Q
    |||||||||||||||||||||||||||||||    
T  42609092 aaacaaaagtggactcaatcacatgatgatg 42609062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 4 - 231
Target Start/End: Complemental strand, 8590628 - 8590401
Alignment:
Q  4 aagaagaaagttgaatgcatgggtaaaaatcatatctctttccacgtaaattcgacattttatttgtttaaaatgacacatctaacttttttcaaaacaa 103  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| | ||||||    
T  8590628 aagaagaaagttgaaggcatgggtaaaaatcatatctctttccacgtaaattcgacatattatttgtttaaaaagacacatctaactttttcccaaacaa 8590529  T
Q  104 tgcaggttacgccatgaacatccctacattcgaatactaccgttctgaaattgctgttgcagaccgaaaggctttagcatgggtcgacaatattcccaaa 203  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8590528 tgcaggttacgccatgaacatccctacattcgaatattaccgttctgaaattgctgttgcagaccgaaaggctttagcatgggtcgacaatattcccaaa 8590429  T
Q  204 caaaagtggactcaatcacatgatgatg 231  Q
    ||||||||||||||||||||||| ||||    
T  8590428 caaaagtggactcaatcacatgacgatg 8590401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 34830298 - 34830068
Alignment:
Q  1 ctaaagaagaaagttgaatgcatgggtaaaaatcatatctctttccacgtaaattcgacattttatttgtttaaaatgacacatctaacttttttcaaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34830298 ctaaagaagaaagttgaatgcatgggtaaaaatcatatctctttccacgtaaattcgacattttatttgtttaaaatgacacatctaacttttttcaaaa 34830199  T
Q  101 caatgcaggttacgccatgaacatccctacattcgaatactaccgttctgaaattgctgttgcagaccgaaaggctttagcatgggtcgacaatattccc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34830198 caatgcaggttacgccatgaacatccctacattcgaatactaccgttctgaaattgctgttgcagaccgaaaggctttagcatgggtcgacaatattccc 34830099  T
Q  201 aaacaaaagtggactcaatcacatgatgatg 231  Q
    |||||||||||||||||||||||||||||||    
T  34830098 aaacaaaagtggactcaatcacatgatgatg 34830068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 4 - 231
Target Start/End: Complemental strand, 46485751 - 46485524
Alignment:
Q  4 aagaagaaagttgaatgcatgggtaaaaatcatatctctttccacgtaaattcgacattttatttgtttaaaatgacacatctaacttttttcaaaacaa 103  Q
    ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||| | ||||||    
T  46485751 aagaagaaagttgaaggcatgggtaaaaatcatatctctttcaacgtaaattcgacatattatttgtttaaaaagacacatctaactttttcccaaacaa 46485652  T
Q  104 tgcaggttacgccatgaacatccctacattcgaatactaccgttctgaaattgctgttgcagaccgaaaggctttagcatgggtcgacaatattcccaaa 203  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46485651 tgcaggttacgccatgaacatccctacattcgaatattaccgttctgaaattgctgttgcagaccgaaaggctttagcatgggtcgacaatattcccaaa 46485552  T
Q  204 caaaagtggactcaatcacatgatgatg 231  Q
    ||||||||||||||||||||||| ||||    
T  46485551 caaaagtggactcaatcacatgacgatg 46485524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 166 - 231
Target Start/End: Original strand, 37171014 - 37171079
Alignment:
Q  166 accgaaaggctttagcatgggtcgacaatattcccaaacaaaagtggactcaatcacatgatgatg 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37171014 accgaaaggctttagcatgggtcgacaatattcccaaacaaaagtggactcaatcacatgatgatg 37171079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 1380122 - 1380352
Alignment:
Q  1 ctaaagaagaaagttgaatgcatgggtaaaaatcatatctctttccacgtaaattcgacattttatttgtttaaaatgacacatctaacttttttcaaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1380122 ctaaagaagaaagttgaatgcatgggtaaaaatcatatctctttccacgtaaattcgacattttatttgtttaaaatgacacatctaacttttttcaaaa 1380221  T
Q  101 caatgcaggttacgccatgaacatccctacattcgaatactaccgttctgaaattgctgttgcagaccgaaaggctttagcatgggtcgacaatattccc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1380222 caatgcaggttacgccatgaacatccctacattcgaatactaccgttctgaaattgctgttgcagaccgaaaggctttagcatgggtcgacaatattccc 1380321  T
Q  201 aaacaaaagtggactcaatcacatgatgatg 231  Q
    |||||||||||||||||||||||||||||||    
T  1380322 aaacaaaagtggactcaatcacatgatgatg 1380352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 20086308 - 20086078
Alignment:
Q  1 ctaaagaagaaagttgaatgcatgggtaaaaatcatatctctttccacgtaaattcgacattttatttgtttaaaatgacacatctaacttttttcaaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20086308 ctaaagaagaaagttgaatgcatgggtaaaaatcatatctctttccacgtaaattcgacattttatttgtttaaaatgacacatctaacttttttcaaaa 20086209  T
Q  101 caatgcaggttacgccatgaacatccctacattcgaatactaccgttctgaaattgctgttgcagaccgaaaggctttagcatgggtcgacaatattccc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20086208 caatgcaggttacgccatgaacatccctacattcgaatactaccgttctgaaattgctgttgcagaccgaaaggctttagcatgggtcgacaatattccc 20086109  T
Q  201 aaacaaaagtggactcaatcacatgatgatg 231  Q
    |||||||||||||||||||||||||||||||    
T  20086108 aaacaaaagtggactcaatcacatgatgatg 20086078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 30825474 - 30825704
Alignment:
Q  1 ctaaagaagaaagttgaatgcatgggtaaaaatcatatctctttccacgtaaattcgacattttatttgtttaaaatgacacatctaacttttttcaaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30825474 ctaaagaagaaagttgaatgcatgggtaaaaatcatatctctttccacgtaaattcgacattttatttgtttaaaatgacacatctaacttttttcaaaa 30825573  T
Q  101 caatgcaggttacgccatgaacatccctacattcgaatactaccgttctgaaattgctgttgcagaccgaaaggctttagcatgggtcgacaatattccc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30825574 caatgcaggttacgccatgaacatccctacattcgaatactaccgttctgaaattgctgttgcagaccgaaaggctttagcatgggtcgacaatattccc 30825673  T
Q  201 aaacaaaagtggactcaatcacatgatgatg 231  Q
    |||||||||||||||||||||||||||||||    
T  30825674 aaacaaaagtggactcaatcacatgatgatg 30825704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 19421423 - 19421193
Alignment:
Q  1 ctaaagaagaaagttgaatgcatgggtaaaaatcatatctctttccacgtaaattcgacattttatttgtttaaaatgacacatctaacttttttcaaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19421423 ctaaagaagaaagttgaatgcatgggtaaaaatcatatctctttccacgtaaattcgacattttatttgtttaaaatgacacatctaacttttttcaaaa 19421324  T
Q  101 caatgcaggttacgccatgaacatccctacattcgaatactaccgttctgaaattgctgttgcagaccgaaaggctttagcatgggtcgacaatattccc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  19421323 caatgcaggttacgccatgaacatccctacattcgaatactaccgttctgaaattgctgttgcagaccgaaaggctttagcatgggtcgaaaatattccc 19421224  T
Q  201 aaacaaaagtggactcaatcacatgatgatg 231  Q
    |||||||||||||||||||||||||||||||    
T  19421223 aaacaaaagtggactcaatcacatgatgatg 19421193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 765718 - 765488
Alignment:
Q  1 ctaaagaagaaagttgaatgcatgggtaaaaatcatatctctttccacgtaaattcgacattttatttgtttaaaatgacacatctaacttttttcaaaa 100  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  765718 ctaaagaaaaaagttgcatgcatgggtaaaaatcatatctctttccacgtaaattcgacattttatttgtttaaaatgacacatctaacttttttcaaaa 765619  T
Q  101 caatgcaggttacgccatgaacatccctacattcgaatactaccgttctgaaattgctgttgcagaccgaaaggctttagcatgggtcgacaatattccc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  765618 caatgcaggttacgccatgaacatccctacattcgaatactaccgttctgaaattgctgttgcagaccgaaaggctttagcatgggtcgacaatattccc 765519  T
Q  201 aaacaaaagtggactcaatcacatgatgatg 231  Q
    |||||||||||||||||||||||||||||||    
T  765518 aaacaaaagtggactcaatcacatgatgatg 765488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 4 - 231
Target Start/End: Complemental strand, 41374427 - 41374200
Alignment:
Q  4 aagaagaaagttgaatgcatgggtaaaaatcatatctctttccacgtaaattcgacattttatttgtttaaaatgacacatctaacttttttcaaaacaa 103  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| | ||||||    
T  41374427 aagaagaaagttgaaggcatgggtaaaaatcatatctctttccacgtaaattcgacatattatttgtttaaaaagacacatctaactttttcccaaacaa 41374328  T
Q  104 tgcaggttacgccatgaacatccctacattcgaatactaccgttctgaaattgctgttgcagaccgaaaggctttagcatgggtcgacaatattcccaaa 203  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41374327 tgcaggttacgccatgaacatccctacattcgaatattaccgttctgaaattgctgttgcagaccgaaaggctttagcatgggtcgacaatattcccaaa 41374228  T
Q  204 caaaagtggactcaatcacatgatgatg 231  Q
    ||||||||||||||||||||||| ||||    
T  41374227 caaaagtggactcaatcacatgacgatg 41374200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 4 - 225
Target Start/End: Complemental strand, 19680349 - 19680128
Alignment:
Q  4 aagaagaaagttgaatgcatgggtaaaaatcatatctctttccacgtaaattcgacattttatttgtttaaaatgacacatctaacttttttcaaaacaa 103  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| | ||||||    
T  19680349 aagaagaaagttgaaggcatgggtaaaaatcatatctctttccacgtaaattcgacatattatttgtttaaaaagacacatctaactttttcccaaacaa 19680250  T
Q  104 tgcaggttacgccatgaacatccctacattcgaatactaccgttctgaaattgctgttgcagaccgaaaggctttagcatgggtcgacaatattcccaaa 203  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  19680249 tgcaggttacgccatgaacatccctacattcgaatattaccgttctgaaattgttgttgcagaccgaaaggctttagcatgggtcgacaatattcccaaa 19680150  T
Q  204 caaaagtggactcaatcacatg 225  Q
    ||||||||||||||||||||||    
T  19680149 caaaagtggactcaatcacatg 19680128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 4 - 231
Target Start/End: Complemental strand, 30663380 - 30663152
Alignment:
Q  4 aagaagaaagttgaatgcatgggtaaaaatcatatctctttccacgtaaattcgacattttatttgtttaaa-atgacacatctaacttttttcaaaaca 102  Q
    ||||||||||||||| |||||||||||||| |||||||| |||  |||| |||||||| ||||||||||||| | ||||||||||| |||||||||||||    
T  30663380 aagaagaaagttgaaggcatgggtaaaaattatatctctatccttgtaatttcgacatattatttgtttaaagaagacacatctaaattttttcaaaaca 30663281  T
Q  103 atgcaggttacgccatgaacatccctacattcgaatactaccgttctgaaattgctgttgcagaccgaaaggctttagcatgggtcgacaatattcccaa 202  Q
    ||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||| || ||||| ||||||||||||||||||||||| ||||||||    
T  30663280 atgcaggttacgccatgaacatcccaacattcgaatactaccgctctgaaatcgctgtcgcggaccggaaggctttagcatgggtcgacaacattcccaa 30663181  T
Q  203 acaaaagtggactcaatcacatgatgatg 231  Q
    | |||||||||||||||||||||||||||    
T  30663180 agaaaagtggactcaatcacatgatgatg 30663152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 10229938 - 10230168
Alignment:
Q  1 ctaaagaagaaagttgaatgcatgggtaaaaatcatatctctttccacgtaaattcgacattttatttgtttaaaatgacacatctaacttttttcaaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10229938 ctaaagaagaaagttgaatgcatgggtaaaaatcatatctctttccacgtaaattcgacattttatttgtttaaaatgacacatctaacttttttcaaaa 10230037  T
Q  101 caatgcaggttacgccatgaacatccctacattcgaatactaccgttctgaaattgctgttgcagaccgaaaggctttagcatgggtcgacaatattccc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10230038 caatgcaggttacgccatgaacatccctacattcgaatactaccgttctgaaattgctgttgcagaccgaaaggctttagcatgggtcgacaatattccc 10230137  T
Q  201 aaacaaaagtggactcaatcacatgatgatg 231  Q
    |||||||||||||||||||||||||||||||    
T  10230138 aaacaaaagtggactcaatcacatgatgatg 10230168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 4 - 231
Target Start/End: Original strand, 5058235 - 5058462
Alignment:
Q  4 aagaagaaagttgaatgcatgggtaaaaatcatatctctttccacgtaaattcgacattttatttgtttaaaatgacacatctaacttttttcaaaacaa 103  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  5058235 aagaagaaagttgaaggcatgggtaaaaatcatatctctttccacgtaaattcgacatattatttgtttaaaaagacacatctaacttttttcaaaacaa 5058334  T
Q  104 tgcaggttacgccatgaacatccctacattcgaatactaccgttctgaaattgctgttgcagaccgaaaggctttagcatgggtcgacaatattcccaaa 203  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  5058335 tgcaggttacgccatgaacatccctacattcgaatattaccgttctgaaattgttgttgcagaccgaaaggctttagcatgggtcgacaatattcccaaa 5058434  T
Q  204 caaaagtggactcaatcacatgatgatg 231  Q
    ||||||||||||||||||||||| ||||    
T  5058435 caaaagtggactcaatcacatgacgatg 5058462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 4 - 231
Target Start/End: Original strand, 20173129 - 20173356
Alignment:
Q  4 aagaagaaagttgaatgcatgggtaaaaatcatatctctttccacgtaaattcgacattttatttgtttaaaatgacacatctaacttttttcaaaacaa 103  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| | ||||||    
T  20173129 aagaagaaagttgaaggcatgggtaaaaatcatatctctttccacgtaaattcgacatattatttgtttaaaaagacacatctaactttttcccaaacaa 20173228  T
Q  104 tgcaggttacgccatgaacatccctacattcgaatactaccgttctgaaattgctgttgcagaccgaaaggctttagcatgggtcgacaatattcccaaa 203  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20173229 tgcaggttacgccatgaacatccctacattcgaatattaccgttctgaaattgctgttgcagaccgaaaggctttagcatgggtcgacaatattcccaaa 20173328  T
Q  204 caaaagtggactcaatcacatgatgatg 231  Q
    ||||||||||||||||||||||| ||||    
T  20173329 caaaagtggactcaatcacatgacgatg 20173356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 98 - 231
Target Start/End: Complemental strand, 18379753 - 18379620
Alignment:
Q  98 aaacaatgcaggttacgccatgaacatccctacattcgaatactaccgttctgaaattgctgttgcagaccgaaaggctttagcatgggtcgacaatatt 197  Q
    |||||||||||| || || |||||||| ||  | ||||| ||||||||   |||||| || |||||||||||| | |||||||| || |||||| | |||    
T  18379753 aaacaatgcaggatatgcgatgaacataccctctttcgagtactaccgcaatgaaatcgcagttgcagaccgacaagctttagcttgagtcgacgacatt 18379654  T
Q  198 cccaaacaaaagtggactcaatcacatgatgatg 231  Q
    | |||| |||||||||||||||| ||||||||||    
T  18379653 ctcaaagaaaagtggactcaatcgcatgatgatg 18379620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 11746500 - 11746270
Alignment:
Q  1 ctaaagaagaaagttgaatgcatgggtaaaaatcatatctctttccacgtaaattcgacattttatttgtttaaaatgacacatctaacttttttcaaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11746500 ctaaagaagaaagttgaatgcatgggtaaaaatcatatctctttccacgtaaattcgacattttatttgtttaaaatgacacatctaacttttttcaaaa 11746401  T
Q  101 caatgcaggttacgccatgaacatccctacattcgaatactaccgttctgaaattgctgttgcagaccgaaaggctttagcatgggtcgacaatattccc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11746400 caatgcaggttacgccatgaacatccctacattcgaatactaccgttctgaaattgctgttgcagaccgaaaggctttagcatgggtcgacaatattccc 11746301  T
Q  201 aaacaaaagtggactcaatcacatgatgatg 231  Q
    |||||||||||||||||||||||||||||||    
T  11746300 aaacaaaagtggactcaatcacatgatgatg 11746270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 37018711 - 37018941
Alignment:
Q  1 ctaaagaagaaagttgaatgcatgggtaaaaatcatatctctttccacgtaaattcgacattttatttgtttaaaatgacacatctaacttttttcaaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37018711 ctaaagaagaaagttgaatgcatgggtaaaaatcatatctctttccacgtaaattcgacattttatttgtttaaaatgacacatctaacttttttcaaaa 37018810  T
Q  101 caatgcaggttacgccatgaacatccctacattcgaatactaccgttctgaaattgctgttgcagaccgaaaggctttagcatgggtcgacaatattccc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37018811 caatgcaggttacgccatgaacatccctacattcgaatactaccgttctgaaattgctgttgcagaccgaaaggctttagcatgggtcgacaatattccc 37018910  T
Q  201 aaacaaaagtggactcaatcacatgatgatg 231  Q
    |||||||||||||||||||||||||||||||    
T  37018911 aaacaaaagtggactcaatcacatgatgatg 37018941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 6900316 - 6900546
Alignment:
Q  1 ctaaagaagaaagttgaatgcatgggtaaaaatcatatctctttccacgtaaattcgacattttatttgtttaaaatgacacatctaacttttttcaaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6900316 ctaaagaagaaagttgaatgcatgggtaaaaatcatatctctttccacgtaaattcgacattttatttgtttaaaatgacacatctaacttttttcaaaa 6900415  T
Q  101 caatgcaggttacgccatgaacatccctacattcgaatactaccgttctgaaattgctgttgcagaccgaaaggctttagcatgggtcgacaatattccc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  6900416 caatgcaggttacgccatgaacatccctacattcgaatactaccgttctgaaattgctgttgcagaccgaaaggctttagcatgggtcgacaatactccc 6900515  T
Q  201 aaacaaaagtggactcaatcacatgatgatg 231  Q
    |||||||||||||||||||||||||||||||    
T  6900516 aaacaaaagtggactcaatcacatgatgatg 6900546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 4 - 231
Target Start/End: Complemental strand, 44334051 - 44333824
Alignment:
Q  4 aagaagaaagttgaatgcatgggtaaaaatcatatctctttccacgtaaattcgacattttatttgtttaaaatgacacatctaacttttttcaaaacaa 103  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| | ||||||    
T  44334051 aagaagaaagttgaaggcatgggtaaaaatcatatctctttccacgtaaattcgacatattatttgtttaaaaagacacatctaactttttcccaaacaa 44333952  T
Q  104 tgcaggttacgccatgaacatccctacattcgaatactaccgttctgaaattgctgttgcagaccgaaaggctttagcatgggtcgacaatattcccaaa 203  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44333951 tgcaggttacgccatgaacatccctacattcgaatattaccgttctgaaattgctgttgcagaccgaaaggctttagcatgggtcgacaatattcccaaa 44333852  T
Q  204 caaaagtggactcaatcacatgatgatg 231  Q
    ||||||||||||||||||||||| ||||    
T  44333851 caaaagtggactcaatcacatgacgatg 44333824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 4 - 231
Target Start/End: Complemental strand, 36627965 - 36627738
Alignment:
Q  4 aagaagaaagttgaatgcatgggtaaaaatcatatctctttccacgtaaattcgacattttatttgtttaaaatgacacatctaacttttttcaaaacaa 103  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||| | ||||||    
T  36627965 aagaagaaagttgaaggcatgggtaaaaatcatatctctttccacgtaaattcgacatattatttgtttaaaaagacacatttaactttttcccaaacaa 36627866  T
Q  104 tgcaggttacgccatgaacatccctacattcgaatactaccgttctgaaattgctgttgcagaccgaaaggctttagcatgggtcgacaatattcccaaa 203  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36627865 tgcaggttacgccatgaacatccctacattcgaatattaccgttctgaaattgctgttgcagaccgaaaggctttagcatgggtcgacaatattcccaaa 36627766  T
Q  204 caaaagtggactcaatcacatgatgatg 231  Q
    ||||||||||||||||||||||| ||||    
T  36627765 caaaagtggactcaatcacatgacgatg 36627738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 4 - 231
Target Start/End: Original strand, 6004964 - 6005192
Alignment:
Q  4 aagaagaaagttgaatgcatgggtaaaaatcatatctctttccacgtaaattcgacattttatttgtttaaa-atgacacatctaacttttttcaaaaca 102  Q
    ||||||||||||||| |||||||||||||| |||||||| |||  |||| |||||||| ||||||||||||| | ||||||||||| |||||||||||||    
T  6004964 aagaagaaagttgaaggcatgggtaaaaattatatctctatccttgtaatttcgacatattatttgtttaaagaagacacatctaaattttttcaaaaca 6005063  T
Q  103 atgcaggttacgccatgaacatccctacattcgaatactaccgttctgaaattgctgttgcagaccgaaaggctttagcatgggtcgacaatattcccaa 202  Q
    ||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||| || ||||| ||||||||||||||||||||||| ||||||||    
T  6005064 atgcaggttacgccatgaacatcccaacattcgaatactaccgctctgaaatcgctgtcgcggaccggaaggctttagcatgggtcgacaacattcccaa 6005163  T
Q  203 acaaaagtggactcaatcacatgatgatg 231  Q
    | |||||||||||||||||||||||||||    
T  6005164 agaaaagtggactcaatcacatgatgatg 6005192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 7 - 231
Target Start/End: Complemental strand, 13721704 - 13721478
Alignment:
Q  7 aagaaagttgaatgcatgggtaaaaatcatatctctttccacgtaaattcgacatttt-atttgtttaaaatgacacatctaacttttttcaaaacaat- 104  Q
    |||||||||||| ||||||||||||||| |||  |||| | ||||||||| ||| | | |||||||||||| |||||||||||||||||||||||||       
T  13721704 aagaaagttgaaggcatgggtaaaaatcttattcctttactcgtaaattcaacaatatgatttgtttaaaaagacacatctaacttttttcaaaacatcc 13721605  T
Q  105 gcaggttacgccatgaacatccctacattcgaatactaccgttctgaaattgctgttgcagaccgaaaggctttagcatgggtcgacaatattcccaaac 204  Q
    |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  13721604 gcaggttacgccatgaacatccctacattcgaatactatcgttatgaaattgctgttgcggaccgaaaggctttagcatgggtcgacaatattcccaaac 13721505  T
Q  205 aaaagtggactcaatcacatgatgatg 231  Q
    |||||||||||||||||||||||||||    
T  13721504 aaaagtggactcaatcacatgatgatg 13721478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 168 - 231
Target Start/End: Original strand, 1736240 - 1736303
Alignment:
Q  168 cgaaaggctttagcatgggtcgacaatattcccaaacaaaagtggactcaatcacatgatgatg 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  1736240 cgaaaggctttagcatgggtcgacaatattcccaaacaaaagtggactcaatcacatgacgatg 1736303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 43803585 - 43803638
Alignment:
Q  1 ctaaagaagaaagttgaatgcatgggtaaaaatcatatctctttccacgtaaat 54  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43803585 ctaaagaagaaagttgaatgcatgggtaaaaatcatatctctttccacgtaaat 43803638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 6410565 - 6410795
Alignment:
Q  1 ctaaagaagaaagttgaatgcatgggtaaaaatcatatctctttccacgtaaattcgacattttatttgtttaaaatgacacatctaacttttttcaaaa 100  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6410565 ctaaagaaaaaagttgcatgcatgggtaaaaatcatatctctttccacgtaaattcgacattttatttgtttaaaatgacacatctaacttttttcaaaa 6410664  T
Q  101 caatgcaggttacgccatgaacatccctacattcgaatactaccgttctgaaattgctgttgcagaccgaaaggctttagcatgggtcgacaatattccc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6410665 caatgcaggttacgccatgaacatccctacattcgaatactaccgttctgaaattgctgttgcagaccgaaaggctttagcatgggtcgacaatattccc 6410764  T
Q  201 aaacaaaagtggactcaatcacatgatgatg 231  Q
    |||||||||||||||||||||||||||||||    
T  6410765 aaacaaaagtggactcaatcacatgatgatg 6410795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 156 - 231
Target Start/End: Original strand, 680958 - 681033
Alignment:
Q  156 gctgttgcagaccgaaaggctttagcatgggtcgacaatattcccaaacaaaagtggactcaatcacatgatgatg 231  Q
    ||||| || ||||||||||||||||||||||| ||||| ||||||||| ||||| |||||||||| ||||||||||    
T  680958 gctgtcgcggaccgaaaggctttagcatgggttgacaacattcccaaagaaaagcggactcaatcgcatgatgatg 681033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0170 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 28397 - 28170
Alignment:
Q  1 ctaaagaagaaagttgaatgcatgggtaaaaatcatatctctttccacgtaaattcgacattttatttgtttaaaatgacacatctaacttttttcaaaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||| |||||||||||||||||||||||    
T  28397 ctaaagaagaaagttgaatgcatgggtaaaaatcatatctctttccacgtaaattcgacat---atttgtttaaaaagacacatctaacttttttcaaaa 28301  T
Q  101 caatgcaggttacgccatgaacatccctacattcgaatactaccgttctgaaattgctgttgcagaccgaaaggctttagcatgggtcgacaatattccc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  28300 caatgcaggttacgccatgaacatccctacattcgaatactaccgttctgaaattgctgttgcagaccgaaatgctttagcatgggtcgacaatattccc 28201  T
Q  201 aaacaaaagtggactcaatcacatgatgatg 231  Q
    |||||||||||||||||||||||||||||||    
T  28200 aaacaaaagtggactcaatcacatgatgatg 28170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 4 - 231
Target Start/End: Complemental strand, 26522852 - 26522625
Alignment:
Q  4 aagaagaaagttgaatgcatgggtaaaaatcatatctctttccacgtaaattcgacattttatttgtttaaaatgacacatctaacttttttcaaaacaa 103  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| | ||||||    
T  26522852 aagaagaaagttgaaggcatgggtaaaaatcatatctctttccacgtaaattcgacatattatttgtttaaaaagacacatctaactttttcccaaacaa 26522753  T
Q  104 tgcaggttacgccatgaacatccctacattcgaatactaccgttctgaaattgctgttgcagaccgaaaggctttagcatgggtcgacaatattcccaaa 203  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26522752 tgcaggttacgccatgaacatccctacattcgaatattaccgttctgaaattgctgttgcagaccgaaaggctttagcatgggtcgacaatattcccaaa 26522653  T
Q  204 caaaagtggactcaatcacatgatgatg 231  Q
    ||||||||||||||||||||||| ||||    
T  26522652 caaaagtggactcaatcacatgacgatg 26522625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 4 - 231
Target Start/End: Complemental strand, 52608079 - 52607850
Alignment:
Q  4 aagaagaaagttgaatgcatgggtaaaaatcatatctctttccacgtaaattcgacatttt-atttgtttaaaatgacacatctaacttttttcaaaaca 102  Q
    ||||||||||||||| ||||||||||||||| |||| |||| | ||||||||| ||| | | |||||||||||| |||||||||||||||||||||||||    
T  52608079 aagaagaaagttgaaggcatgggtaaaaatcttatccctttactcgtaaattcaacaatatgatttgtttaaaaagacacatctaacttttttcaaaaca 52607980  T
Q  103 at-gcaggttacgccatgaacatccctacattcgaatactaccgttctgaaattgctgttgcagaccgaaaggctttagcatgggtcgacaatattccca 201  Q
       |||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  52607979 tccgcaggttacgccatgaacatccttacattcgaatactatcgttctgaaattgttgttgcagaccgaaaggctttagcatgggtcgacaatattccca 52607880  T
Q  202 aacaaaagtggactcaatcacatgatgatg 231  Q
    ||||||||||||||||||||||||||||||    
T  52607879 aacaaaagtggactcaatcacatgatgatg 52607850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 4 - 231
Target Start/End: Complemental strand, 39197029 - 39196801
Alignment:
Q  4 aagaagaaagttgaatgcatgggtaaaaatcatatctctttccacgtaaattcgacattttatttgtttaaa-atgacacatctaacttttttcaaaaca 102  Q
    ||||||||||||||| ||||| |||||||| |||||||| |||  |||| |||||||| ||||||||||||| | ||||||||||| |||||||||||||    
T  39197029 aagaagaaagttgaaggcatgagtaaaaattatatctctatccttgtaatttcgacatattatttgtttaaagaagacacatctaaattttttcaaaaca 39196930  T
Q  103 atgcaggttacgccatgaacatccctacattcgaatactaccgttctgaaattgctgttgcagaccgaaaggctttagcatgggtcgacaatattcccaa 202  Q
    ||||||||||||||||||||||||| ||||||||||||||||| | |||||| |||||  | ||||||||||||||||||||||||||||| |||| |||    
T  39196929 atgcaggttacgccatgaacatcccaacattcgaatactaccgctttgaaatcgctgtcacggaccgaaaggctttagcatgggtcgacaacattctcaa 39196830  T
Q  203 acaaaagtggactcaatcacatgatgatg 231  Q
    | |||||||||||||||||||||||||||    
T  39196829 agaaaagtggactcaatcacatgatgatg 39196801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0504 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: scaffold0504
Description:

Target: scaffold0504; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 4 - 231
Target Start/End: Complemental strand, 3171 - 2944
Alignment:
Q  4 aagaagaaagttgaatgcatgggtaaaaatcatatctctttccacgtaaattcgacattttatttgtttaaaatgacacatctaacttttttcaaaacaa 103  Q
    ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||| ||| ||||||||||||||||||    
T  3171 aagaagaaagttgaaggcatgggtaaaaatcatatctctttcctcgtaaattcgacatattatttgtttaaaaagacccatttaacttttttcaaaacaa 3072  T
Q  104 tgcaggttacgccatgaacatccctacattcgaatactaccgttctgaaattgctgttgcagaccgaaaggctttagcatgggtcgacaatattcccaaa 203  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  3071 tgcaggttacgccatgaacatccctacattcgaatactaccgttttgaaattgttgttgcagaccgaaaggctttagcatgggtcgacaatattcacaaa 2972  T
Q  204 caaaagtggactcaatcacatgatgatg 231  Q
    ||||||||||||||||||||||||||||    
T  2971 caaaagtggactcaatcacatgatgatg 2944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 4 - 231
Target Start/End: Complemental strand, 26335494 - 26335270
Alignment:
Q  4 aagaagaaagttgaatgcatgggtaaaaatcatatctctttccacgtaaattcgacattttatttgtttaaaatgacacatctaacttttttcaaaacaa 103  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    |||||||||||| ||||||||||||||||||||||||||    
T  26335494 aagaagaaagttgaaggcatgggtaaaaatcatatctctttccacgtaaattcgacag---atttgtttaaaacgacacatctaacttttttcaaaacaa 26335398  T
Q  104 tgcaggttacgccatgaacatccctacattcgaatactaccgttctgaaattgctgttgcagaccgaaaggctttagcatgggtcgacaatattcccaaa 203  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  26335397 tacaggttacgccatgaacatccctacattcgaatactaccgttctgaaattgatgttgcagaccgaaaggctttagcatgggtcgacaatattcccaaa 26335298  T
Q  204 caaaagtggactcaatcacatgatgatg 231  Q
    |||||||||| |||||||||||||||||    
T  26335297 caaaagtggaatcaatcacatgatgatg 26335270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 4 - 231
Target Start/End: Complemental strand, 22023943 - 22023716
Alignment:
Q  4 aagaagaaagttgaatgcatgggtaaaaatcatatctctttccacgtaaattcgacattttatttgtttaaaatgacacatctaacttttttcaaaacaa 103  Q
    ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| | ||||||    
T  22023943 aagaagaaagttgaaggcatgggtaaaaaacatatctctttccacgtaaattcgacatattatttgtttaaaaagacacatctaactttttcctaaacaa 22023844  T
Q  104 tgcaggttacgccatgaacatccctacattcgaatactaccgttctgaaattgctgttgcagaccgaaaggctttagcatgggtcgacaatattcccaaa 203  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  22023843 tgcaggttacgccatgaacatccctacattcgaatattaccgttctgaaattgctgttgtagaccgaaaggctttagcatgggtcgaaaatattcccaaa 22023744  T
Q  204 caaaagtggactcaatcacatgatgatg 231  Q
    ||||||||||||||||||||||| ||||    
T  22023743 caaaagtggactcaatcacatgacgatg 22023716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 4 - 231
Target Start/End: Complemental strand, 13048619 - 13048392
Alignment:
Q  4 aagaagaaagttgaatgcatgggtaaaaatcatatctctttccacgtaaattcgacattttatttgtttaaaatgacacatctaactt-ttttcaaaaca 102  Q
    ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||| |||||||||||    
T  13048619 aagaagaaagttgaaggcatgggtaaaaatcatatctctttcctcgtaaattcgacatattatttgtttaaaaagacacatctaactttttttcaaaaca 13048520  T
Q  103 atgcaggttacgccatgaacatccctacattcgaatactaccgttctgaaattgctgttgcagaccgaaaggctttagcatgggtcgacaatattcccaa 202  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  13048519 atgcaggttacgccatgagcatccctacattcgaatactaccgttctgaaattgttgttgcaga-cgaaaggctttagcatgggtcgacaatattcccaa 13048421  T
Q  203 acaaaagtggactcaatcacatgatgatg 231  Q
    ||||||| |||||||||||||||||||||    
T  13048420 acaaaagcggactcaatcacatgatgatg 13048392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 54 - 224
Target Start/End: Complemental strand, 34677752 - 34677582
Alignment:
Q  54 ttcgacattttatttgtttaaaatgacacatctaacttttttcaaaacaatgcaggttacgccatgaacatccctacattcgaatactaccgttctgaaa 153  Q
    |||| ||| |||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  34677752 ttcgtcatattatttttttaaaaagacacatctaacttttttcaaaacaatgcaggttaggccatgaacatccctacattcgaatactaccgttctgaaa 34677653  T
Q  154 ttgctgttgcagaccgaaaggctttagcatgggtcgacaatattcccaaacaaaagtggactcaatcacat 224  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34677652 ttgttgttgcagaccgaaaggctttagcatgggtcgacaatattcccaaacaaaagtggactcaatcacat 34677582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 45 times since January 2019
Visitors: 6700