View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0897_low_6 (Length: 251)

Name: NF0897_low_6
Description: NF0897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0897_low_6
NF0897_low_6
[»] scaffold0028 (1 HSPs)
scaffold0028 (23-251)||(39793-40021)
[»] chr7 (2 HSPs)
chr7 (31-251)||(14302098-14302317)
chr7 (23-104)||(19381654-19381734)
[»] chr4 (4 HSPs)
chr4 (23-227)||(9650550-9650755)
chr4 (23-118)||(16569783-16569878)
chr4 (110-221)||(9220350-9220460)
chr4 (35-82)||(12452298-12452345)
[»] scaffold1923 (1 HSPs)
scaffold1923 (23-170)||(1083-1230)
[»] chr8 (3 HSPs)
chr8 (23-211)||(23638598-23638786)
chr8 (23-221)||(17624410-17624608)
chr8 (123-221)||(24382816-24382914)
[»] scaffold0035 (1 HSPs)
scaffold0035 (28-228)||(34663-34862)
[»] chr2 (7 HSPs)
chr2 (23-128)||(23167716-23167821)
chr2 (23-128)||(23578973-23579078)
chr2 (23-221)||(28773056-28773246)
chr2 (109-221)||(17739569-17739680)
chr2 (112-216)||(24280088-24280191)
chr2 (59-144)||(24280009-24280094)
chr2 (23-82)||(34136033-34136092)
[»] chr3 (1 HSPs)
chr3 (23-184)||(11834067-11834228)
[»] chr5 (5 HSPs)
chr5 (107-221)||(22949990-22950104)
chr5 (72-221)||(17362667-17362814)
chr5 (32-104)||(10178444-10178516)
chr5 (50-104)||(24192526-24192580)
chr5 (149-221)||(24192599-24192670)
[»] scaffold0305 (1 HSPs)
scaffold0305 (169-228)||(934-993)
[»] scaffold0135 (1 HSPs)
scaffold0135 (110-221)||(31001-31111)
[»] scaffold0053 (1 HSPs)
scaffold0053 (159-221)||(76448-76510)
[»] scaffold0205 (1 HSPs)
scaffold0205 (206-251)||(4998-5043)
[»] chr6 (1 HSPs)
chr6 (73-129)||(12484898-12484954)


Alignment Details
Target: scaffold0028 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 23 - 251
Target Start/End: Complemental strand, 40021 - 39793
Alignment:
Q  23 atcatcaaatgtacaagtatcaccattaataacaaacatcaacaagtacacatcttcacatattcatcaaatatcatcaagtgtacaattcaccaaactc 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  40021 atcatcaaatgtacaagtatcaccattaataacaaacatcaacaagtacacatcttcacatattcaccaaatatcatcaagtgtacaattcaccaaactc 39922  T
Q  123 accaatgaacaaaaatcaccaaaattcaccaaacgcataatcaaatatgacgcatttaacaaactcatcaaatgtatgtaatgcgcctatacacaactcc 222  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  39921 accaatgaacaaaaatcaccaaaaatcaccaaacgcataatcaaatatgacacatttaacaaactcatcaaatgtatgtaatgcgcctatacacaactcc 39822  T
Q  223 tacatggacactgtaccatcaccaacaac 251  Q
    |||||||||||||||||||||||||||||    
T  39821 tacatggacactgtaccatcaccaacaac 39793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 129; Significance: 7e-67; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 31 - 251
Target Start/End: Complemental strand, 14302317 - 14302098
Alignment:
Q  31 atgtacaagtatcaccattaataacaaacatcaacaagtacacatcttcacatattcatcaaatatcatcaagtgtacaattcaccaaactcaccaatga 130  Q
    ||||||||||||||||||||| ||| ||||||| |||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||||      
T  14302317 atgtacaagtatcaccattaacaacgaacatcatcaagtacacaccttcacatattcaccaaatatcaccaagtgtacaattcaccaaactcaccaatac 14302218  T
Q  131 acaaaaatcaccaaaattcaccaaacgcataatcaaatatgacgcatttaacaaactcatcaaatgtatgtaatgcgcctatacacaactcctacatgga 230  Q
    ||| |||||||| || |||||||||| |||||||||||||||| ||||||||||  ||||||||||||||||||||||||| |||  ||||||||||| |    
T  14302217 acataaatcacc-aagttcaccaaacacataatcaaatatgacacatttaacaatttcatcaaatgtatgtaatgcgcctagacatgactcctacatgca 14302119  T
Q  231 cactgtaccatcaccaacaac 251  Q
      | |||||||||||||||||    
T  14302118 tgcggtaccatcaccaacaac 14302098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 104
Target Start/End: Original strand, 19381654 - 19381734
Alignment:
Q  23 atcatcaaatgtacaagtatcaccattaataacaaacatcaacaagtacacatcttcacatattcatcaaatatcatcaagt 104  Q
    |||||||||| ||| |||||  ||| ||||| ||| ||||| |||||||||||||||| || |||| ||||||||| |||||    
T  19381654 atcatcaaatatacgagtattgccaataatagcaa-catcatcaagtacacatcttcatatgttcaccaaatatcaccaagt 19381734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 118; Significance: 3e-60; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 23 - 227
Target Start/End: Original strand, 9650550 - 9650755
Alignment:
Q  23 atcatcaaatgtacaagtatcaccattaataacaaacatcaacaagtacacatcttcacatattcatcaaatatcatcaagtgtac-aattcaccaaact 121  Q
    |||||||||  |||||||||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||| |||||||||||||    
T  9650550 atcatcaaacatacaagtatcaccattaaaaacaaacatcaacaaggacacatcttcacatattcaccaaatatcaccaagtgtacaaattcaccaaact 9650649  T
Q  122 caccaatgaacaaaaatcaccaaaattcaccaaacgcataatcaaatatgacgcatttaacaaactcatcaaatgtatgtaatgcgcctatacacaactc 221  Q
    || ||||| ||| ||||||||||| | |||||||| ||||||||| ||||| |||||||||||  |||||||||||||||||||||| || |||| ||||    
T  9650650 catcaatgcacataaatcaccaaagtccaccaaacacataatcaattatgatgcatttaacaatttcatcaaatgtatgtaatgcgcttagacacgactc 9650749  T
Q  222 ctacat 227  Q
     |||||    
T  9650750 atacat 9650755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 23 - 118
Target Start/End: Original strand, 16569783 - 16569878
Alignment:
Q  23 atcatcaaatgtacaagtatcaccattaataacaaacatcaacaagtacacatcttcacatattcatcaaatatcatcaagtgtacaattcaccaa 118  Q
    |||| ||||||||||| ||||||||  ||||||| |||||| |||||| ||||||||| || |||| ||||| ||| |||||  ||||||||||||    
T  16569783 atcaccaaatgtacaaatatcaccaaaaataacacacatcatcaagtatacatcttcatatgttcaccaaatttcaccaagtacacaattcaccaa 16569878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 221
Target Start/End: Original strand, 9220350 - 9220460
Alignment:
Q  110 attcaccaaactcaccaatgaacaaaaatcaccaaaattcaccaaacgcataatcaaatatgacgcatttaacaaactcatcaaatgtatgtaatgcgcc 209  Q
    |||||||||  ||||||||| ||| ||||||||||  |||||||| | ||||| |||||| ||| |||||||  || | |||| ||||||||||||||||    
T  9220350 attcaccaagttcaccaatgcacataaatcaccaaggttcaccaagcacataaacaaatacgacacatttaatcaatt-atcatatgtatgtaatgcgcc 9220448  T
Q  210 tatacacaactc 221  Q
    || |||| ||||    
T  9220449 taaacacgactc 9220460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 82
Target Start/End: Complemental strand, 12452345 - 12452298
Alignment:
Q  35 acaagtatcaccattaataacaaacatcaacaagtacacatcttcaca 82  Q
    |||||||||||||  |||||||||||||| | ||||||||||||||||    
T  12452345 acaagtatcaccaaaaataacaaacatcatcgagtacacatcttcaca 12452298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1923 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: scaffold1923
Description:

Target: scaffold1923; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 23 - 170
Target Start/End: Original strand, 1083 - 1230
Alignment:
Q  23 atcatcaaatgtacaagtatcaccattaataacaaacatcaacaagtacacatcttcacatattcatcaaatatcatcaagtgtacaattcaccaaactc 122  Q
    |||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||    
T  1083 atcatcaaatgtacaagtttcaccattaacaacaaacatcaacaagtacacatcttcacatattcaccaaatatcaccaagtgtacaattcaccaaactc 1182  T
Q  123 accaatgaacaaaaatcaccaaaattcaccaaacgcataatcaaatat 170  Q
    ||||||| ||| |||||||||||||||||||||| ||| |||||||||    
T  1183 accaatgcacataaatcaccaaaattcaccaaacacatgatcaaatat 1230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 109; Significance: 6e-55; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 23 - 211
Target Start/End: Original strand, 23638598 - 23638786
Alignment:
Q  23 atcatcaaatgtacaagtatcaccattaataacaaacatcaacaagtacacatcttcacatattcatcaaatatcatcaagtgtacaattcaccaaactc 122  Q
    |||||||||||||||||||||||||  |||||||||||||| ||||||||||||||||||| |||| | ||| |||  ||||||||||||||||||||||    
T  23638598 atcatcaaatgtacaagtatcaccaacaataacaaacatcatcaagtacacatcttcacatgttcaccgaatttcacaaagtgtacaattcaccaaactc 23638697  T
Q  123 accaatgaacaaaaatcaccaaaattcaccaaacgcataatcaaatatgacgcatttaacaaactcatcaaatgtatgtaatgcgccta 211  Q
    ||||||| | | ||||||||||  |||||||| | |||||||||||||||||||||||||||  ||| |||||||||||||||| ||||    
T  23638698 accaatgcatataaatcaccaaggttcaccaagcacataatcaaatatgacgcatttaacaacatcaccaaatgtatgtaatgcaccta 23638786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 23 - 221
Target Start/End: Complemental strand, 17624608 - 17624410
Alignment:
Q  23 atcatcaaatgtacaagtatcaccattaataacaaacatcaacaagtacacatcttcacatattcatcaaatatcatcaagtgtacaattcaccaaactc 122  Q
    |||| ||| ||||||||||||||||  |||||||| ||||  |||||||||||||||| || |||| ||||| ||| |||||  ||||||||||||  ||    
T  17624608 atcaccaagtgtacaagtatcaccaacaataacaagcatcgtcaagtacacatcttcatatgttcaccaaatttcaccaagtacacaattcaccaagttc 17624509  T
Q  123 accaatgaacaaaaatcaccaaaattcaccaaacgcataatcaaatatgacgcatttaacaaactcatcaaatgtatgtaatgcgcctatacacaactc 221  Q
    ||||||| ||| ||||||| ||  ||||| || | ||||||| |||||||  ||||||||||  ||| |||||||||| ||||||| || |||| ||||    
T  17624508 accaatgcacataaatcacaaaggttcactaagcacataatccaatatgaaacatttaacaacttcaccaaatgtatgcaatgcgcttagacacgactc 17624410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 221
Target Start/End: Original strand, 24382816 - 24382914
Alignment:
Q  123 accaatgaacaaaaatcaccaaaattcaccaaacgcataatcaaatatgacgcatttaacaaactcatcaaatgtatgtaatgcgcctatacacaactc 221  Q
    ||||||| ||| ||||||||||  |||||||| | |||||| |||||||||||| |||| ||  ||| |||| ||||| ||| |||||| |||| ||||    
T  24382816 accaatgcacataaatcaccaaggttcaccaagcacataataaaatatgacgcaattaaaaacttcaccaaaggtatgcaatacgcctagacacgactc 24382914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 28 - 228
Target Start/End: Complemental strand, 34862 - 34663
Alignment:
Q  28 caaatgtacaagtatcaccattaataacaaacatcaacaagtacacatcttcacatattcatcaaatatcatcaagtgtacaattcaccaaactcaccaa 127  Q
    ||||||||||||||| |||| ||| ||||||||||| |||||||||||||||||| ||||| | ||||||| ||||||||||||||||||||||||||||    
T  34862 caaatgtacaagtattaccaataacaacaaacatcatcaagtacacatcttcacacattcaccgaatatcaccaagtgtacaattcaccaaactcaccaa 34763  T
Q  128 tgaacaaaaatcaccaaaattcaccaaacgcataatcaaatatgacgcatttaacaaactcatcaaatgtatgtaatgcgcctatacacaactcctacat 227  Q
    || ||| ||||||||||  |||||||||| |||||| ||||||||||  ||||||||| | | | |||||||||||| |||||| |||| ||||||||||    
T  34762 tgcacataaatcaccaaggttcaccaaacacataataaaatatgacgtttttaacaaa-ttaaccaatgtatgtaatacgcctagacacgactcctacat 34664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 23 - 128
Target Start/End: Complemental strand, 23167821 - 23167716
Alignment:
Q  23 atcatcaaatgtacaagtatcaccattaataacaaacatcaacaagtacacatcttcacatattcatcaaatatcatcaagtgtacaattcaccaaactc 122  Q
    ||||||||| ||||||||||||||| ||| |||||||||||  |||||||| |||||||||||||| ||||||||| ||||||||||| |||||||| ||    
T  23167821 atcatcaaaggtacaagtatcaccaataacaacaaacatcacaaagtacacgtcttcacatattcaccaaatatcaccaagtgtacaactcaccaaattc 23167722  T
Q  123 accaat 128  Q
    ||||||    
T  23167721 accaat 23167716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 23 - 128
Target Start/End: Complemental strand, 23579078 - 23578973
Alignment:
Q  23 atcatcaaatgtacaagtatcaccattaataacaaacatcaacaagtacacatcttcacatattcatcaaatatcatcaagtgtacaattcaccaaactc 122  Q
    ||||||||| ||||||||||||||| ||| |||||||||||  |||||||| |||||||||||||| ||||||||| ||||||||||| |||||||| ||    
T  23579078 atcatcaaaggtacaagtatcaccaataacaacaaacatcacaaagtacacgtcttcacatattcaccaaatatcaccaagtgtacaactcaccaaattc 23578979  T
Q  123 accaat 128  Q
    ||||||    
T  23578978 accaat 23578973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 23 - 221
Target Start/End: Original strand, 28773056 - 28773246
Alignment:
Q  23 atcatcaaatgtacaagtatcaccattaataacaaacatcaacaagtacacatcttcacatattcatcaaatatcatcaagtgtacaattcaccaaactc 122  Q
    |||| ||||||||||||||| ||||   ||||||||||||||||||||||||| |||||        ||||| ||| |||||  || |||||||||| ||    
T  28773056 atcaccaaatgtacaagtataaccaaggataacaaacatcaacaagtacacatgttcac--------caaatttcaccaagtacaccattcaccaaattc 28773147  T
Q  123 accaatgaacaaaaatcaccaaaattcaccaaacgcataatcaaatatgacgcatttaacaaactcatcaaatgtatgtaatgcgcctatacacaactc 221  Q
    ||||||| ||| |||||| ||| ||||||||| |  ||||| |||||| ||  |||||||||   |  |||||||||| |||||||||| |||| ||||    
T  28773148 accaatgcacataaatcatcaagattcaccaagcatataattaaatataacatatttaacaactgcgccaaatgtatgcaatgcgcctagacacgactc 28773246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 109 - 221
Target Start/End: Original strand, 17739569 - 17739680
Alignment:
Q  109 aattcaccaaactcaccaatgaacaaaaatcaccaaaattcaccaaacgcataatcaaatatgacgcatttaacaaactcatcaaatgtatgtaatgcgc 208  Q
    ||||||||||  |||| |||| ||| ||||||||||  |||| ||||| |||||||||||||||| |||||||| || | |||||||||||| |||||||    
T  17739569 aattcaccaagttcactaatgcacataaatcaccaaggttcatcaaacacataatcaaatatgacacatttaactaa-ttatcaaatgtatgaaatgcgc 17739667  T
Q  209 ctatacacaactc 221  Q
    ||| |||| ||||    
T  17739668 ctagacacgactc 17739680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 112 - 216
Target Start/End: Original strand, 24280088 - 24280191
Alignment:
Q  112 tcaccaaactcaccaatgaacaaaaatcaccaaaattcaccaaacgcataatcaaatatgacgcatttaacaaactcatcaaatgtatgtaatgcgccta 211  Q
    |||||||  ||||||||| | | ||||||||||  |||||||| | | |||||||||||||||||||||||||  ||| ||||||||||||||||| |||    
T  24280088 tcaccaagttcaccaatgcatataaatcaccaag-ttcaccaagcacgtaatcaaatatgacgcatttaacaacatcaccaaatgtatgtaatgcgtcta 24280186  T
Q  212 tacac 216  Q
     ||||    
T  24280187 gacac 24280191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 144
Target Start/End: Original strand, 24280009 - 24280094
Alignment:
Q  59 catcaacaagtacacatcttcacatattcatcaaatatcatcaagtgtacaattcaccaaactcaccaatgaacaaaaatcaccaa 144  Q
    ||||| ||||||||||| ||||||| |||| ||||| ||| |||||  ||||||||||||  ||||||||| | | ||||||||||    
T  24280009 catcatcaagtacacattttcacatgttcaccaaatttcaccaagtacacaattcaccaagttcaccaatgcatataaatcaccaa 24280094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 82
Target Start/End: Complemental strand, 34136092 - 34136033
Alignment:
Q  23 atcatcaaatgtacaagtatcaccattaataacaaacatcaacaagtacacatcttcaca 82  Q
    |||| ||| |||||||| | |||||  |||||||||||||||||||||||||||| ||||    
T  34136092 atcaccaagtgtacaagcaccaccaaaaataacaaacatcaacaagtacacatctccaca 34136033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 23 - 184
Target Start/End: Complemental strand, 11834228 - 11834067
Alignment:
Q  23 atcatcaaatgtacaagtatcaccattaataacaaacatcaacaagtacacatcttcacatattcatcaaatatcatcaagtgtacaattcaccaaactc 122  Q
    |||| ||| ||||||||||||||||  || ||||||||||| ||||||||||||||||||| |||| ||||| ||| ||| |  || |||||||||| ||    
T  11834228 atcaccaagtgtacaagtatcaccaaaaacaacaaacatcaccaagtacacatcttcacatgttcaccaaatttcaccaaatacaccattcaccaaattc 11834129  T
Q  123 accaatgaacaaaaatcaccaaaattcaccaaacgcataatcaaatatgacgcatttaacaa 184  Q
    ||||||| ||| |||||| |||  |||||||| |  ||||| ||||||||| ||||||||||    
T  11834128 accaatgcacataaatcatcaaggttcaccaagcatataattaaatatgacacatttaacaa 11834067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 107 - 221
Target Start/End: Original strand, 22949990 - 22950104
Alignment:
Q  107 acaattcaccaaactcaccaatgaacaaaaatcaccaaaattcaccaaacgcataatcaaatatgacgcatttaacaaactcatcaaatgtatgtaatgc 206  Q
    ||||||||||||  ||||||||| ||| ||||||||||  |||||||| |  ||||||||||||||| |||||||| |   || |||||||||| |||||    
T  22949990 acaattcaccaagttcaccaatgcacataaatcaccaaggttcaccaagcatataatcaaatatgacacatttaaccactccaccaaatgtatgaaatgc 22950089  T
Q  207 gcctatacacaactc 221  Q
    ||||| | |||||||    
T  22950090 gcctagatacaactc 22950104  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 72 - 221
Target Start/End: Original strand, 17362667 - 17362814
Alignment:
Q  72 acatcttcacatattcatcaaatatcatcaagtgtacaattcaccaaactcaccaatgaacaaaaatcaccaaaattcaccaaacgcataatcaaatatg 171  Q
    ||||||||||||||||| ||||| ||| |||||  | ||||||||||  | | ||||| ||| ||||||||||  |||||||| | ||||||| ||||||    
T  17362667 acatcttcacatattcaccaaatttcaccaagtacataattcaccaagttgatcaatgcacataaatcaccaaggttcaccaagcacataatc-aatatg 17362765  T
Q  172 acgcatttaacaaactcatcaaatgtatgtaatgcgcctatacacaactc 221  Q
    || || ||||| || | |||||||||||| |||||||||| |||| ||||    
T  17362766 acacacttaactaa-ttatcaaatgtatgcaatgcgcctagacacgactc 17362814  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 32 - 104
Target Start/End: Complemental strand, 10178516 - 10178444
Alignment:
Q  32 tgtacaagtatcaccattaataacaaacatcaacaagtacacatcttcacatattcatcaaatatcatcaagt 104  Q
    ||||||||||||||||  |||||||||||||  ||||||||||||||||||| || | ||||| ||| |||||    
T  10178516 tgtacaagtatcaccaagaataacaaacatcctcaagtacacatcttcacatgtttaccaaatttcaccaagt 10178444  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 50 - 104
Target Start/End: Original strand, 24192526 - 24192580
Alignment:
Q  50 aataacaaacatcaacaagtacacatcttcacatattcatcaaatatcatcaagt 104  Q
    ||||||||||||| ||||||||||||||||| ||||||| ||||| ||| |||||    
T  24192526 aataacaaacatctacaagtacacatcttcatatattcaccaaatttcaccaagt 24192580  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 221
Target Start/End: Original strand, 24192599 - 24192670
Alignment:
Q  149 caccaaacgcataatcaaatatgacgcatttaacaaactcatcaaatgtatgtaatgcgcctatacacaactc 221  Q
    |||||||| |||| ||||||||||| ||||||||||  ||| |||||||||| || ||||||| |||| ||||    
T  24192599 caccaaacacata-tcaaatatgacacatttaacaacttcaccaaatgtatgcaacgcgcctagacacgactc 24192670  T

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Target: scaffold0305 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0305
Description:

Target: scaffold0305; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 228
Target Start/End: Original strand, 934 - 993
Alignment:
Q  169 atgacgcatttaacaaactcatcaaatgtatgtaatgcgcctatacacaactcctacatg 228  Q
    ||||||||||||||||| ||| ||||||| | ||||||||||| |||| |||||||||||    
T  934 atgacgcatttaacaaattcaccaaatgtctttaatgcgcctagacacgactcctacatg 993  T

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Target: scaffold0135 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 221
Target Start/End: Original strand, 31001 - 31111
Alignment:
Q  110 attcaccaaactcaccaatgaacaaaaatcaccaaaattcaccaaacgcataatcaaatatgacgcatttaacaaactcatcaaatgtatgtaatgcgcc 209  Q
    |||||||||  ||||||||| ||| ||||||||||  |||||||| | ||||| |||||| ||| |||||||  || | |||| ||||||||||||||||    
T  31001 attcaccaagttcaccaatgcacataaatcaccaaggttcaccaagcacataaacaaatacgacacatttaatcaatt-atcatatgtatgtaatgcgcc 31099  T
Q  210 tatacacaactc 221  Q
    || |||| ||||    
T  31100 taaacacgactc 31111  T

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Target: scaffold0053 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 221
Target Start/End: Complemental strand, 76510 - 76448
Alignment:
Q  159 ataatcaaatatgacgcatttaacaaactcatcaaatgtatgtaatgcgcctatacacaactc 221  Q
    ||||| ||||||||| ||||||||||  ||||||||||||||  ||||||||| |||| ||||    
T  76510 ataattaaatatgacacatttaacaacttcatcaaatgtatgctatgcgcctagacacgactc 76448  T

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Target: scaffold0205 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 206 - 251
Target Start/End: Original strand, 4998 - 5043
Alignment:
Q  206 cgcctatacacaactcctacatggacactgtaccatcaccaacaac 251  Q
    |||||| |||| ||||||| |||||||| |||||||||||||||||    
T  4998 cgcctagacacgactcctatatggacacggtaccatcaccaacaac 5043  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 129
Target Start/End: Original strand, 12484898 - 12484954
Alignment:
Q  73 catcttcacatattcatcaaatatcatcaagtgtacaattcaccaaactcaccaatg 129  Q
    |||||||| ||||||| ||||| ||| ||||| |||||||||||||  |||||||||    
T  12484898 catcttcatatattcaacaaatttcaccaagtatacaattcaccaagttcaccaatg 12484954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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