View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0897_low_7 (Length: 249)

Name: NF0897_low_7
Description: NF0897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0897_low_7
NF0897_low_7
[»] chr4 (3 HSPs)
chr4 (4-239)||(13428925-13429160)
chr4 (25-85)||(33327522-33327582)
chr4 (24-80)||(48519411-48519467)
[»] chr2 (2 HSPs)
chr2 (83-191)||(15421448-15421555)
chr2 (138-186)||(19478745-19478793)
[»] chr5 (5 HSPs)
chr5 (87-147)||(29403109-29403169)
chr5 (106-231)||(24208381-24208506)
chr5 (83-143)||(9249834-9249894)
chr5 (83-147)||(28197402-28197466)
chr5 (22-83)||(14612654-14612715)
[»] chr8 (2 HSPs)
chr8 (23-80)||(9488431-9488488)
chr8 (24-82)||(9488141-9488199)
[»] chr1 (1 HSPs)
chr1 (24-81)||(24536802-24536859)
[»] chr7 (4 HSPs)
chr7 (24-82)||(12349998-12350056)
chr7 (24-82)||(12869936-12869994)
chr7 (24-83)||(31731185-31731244)
chr7 (100-146)||(5473542-5473588)
[»] chr3 (1 HSPs)
chr3 (24-82)||(37289661-37289719)


Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 4 - 239
Target Start/End: Original strand, 13428925 - 13429160
Alignment:
Q  4 tcatcacaccttttcttgatgaaaattgctcttctaccatcaagatttgatcaatcccatacaaactgacgaaaatacctaagtcaccttgaactccaac 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  13428925 tcatcacaccttttcttgatgaaaattgctcttctaccatcaagatttgatcaatcccatacaaattgacgaaaatacctaagtcaccttgaactccaac 13429024  T
Q  104 gtgagttaactcacgctcattacaggtcaacataacttaactcatgttggacttaacacctgcgtgatttaagtcacgttgggcctgtgtccactaccag 203  Q
    | ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||| |||| ||||| |||||||||||||||||||||||    
T  13429025 gcgagttaactcacgctcattacaggtcaacatgacttaactcacgttggacttaacaccagcgtaattttagtcatgttgggcctgtgtccactaccag 13429124  T
Q  204 aatagtagaaacacatttccccctaattctttcata 239  Q
    ||||||||||||||||||||| ||||||||||||||    
T  13429125 aatagtagaaacacatttccctctaattctttcata 13429160  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 85
Target Start/End: Original strand, 33327522 - 33327582
Alignment:
Q  25 aaaattgctcttctaccatcaagatttgatcaatcccatacaaactgacgaaaatacctaa 85  Q
    |||||| |||||||  |||||||||||| | | ||||||||||| ||||||||||||||||    
T  33327522 aaaatttctcttctctcatcaagatttgttaactcccatacaaattgacgaaaatacctaa 33327582  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 48519467 - 48519411
Alignment:
Q  24 gaaaattgctcttctaccatcaagatttgatcaatcccatacaaactgacgaaaata 80  Q
    |||||||| ||||||| |||||||||||| ||| || |||||||| |||||||||||    
T  48519467 gaaaattgttcttctatcatcaagatttgttcactctcatacaaattgacgaaaata 48519411  T

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Target: chr2 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 83 - 191
Target Start/End: Original strand, 15421448 - 15421555
Alignment:
Q  83 taagtcaccttgaactccaacgtgagttaactcacgctcattacaggtcaacataacttaactcatgttggacttaacacctgcgtgatttaagtcacgt 182  Q
    |||||||| |||||||| | |||||||||| ||||||  ||||||||||||| | |||| |||||| ||||  |||||| |||||||  |||||||||||    
T  15421448 taagtcacgttgaactc-agcgtgagttaagtcacgcggattacaggtcaacgtgactttactcattttgggtttaacatctgcgtgggttaagtcacgt 15421546  T
Q  183 tgggcctgt 191  Q
    |||||||||    
T  15421547 tgggcctgt 15421555  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 186
Target Start/End: Complemental strand, 19478793 - 19478745
Alignment:
Q  138 acttaactcatgttggacttaacacctgcgtgatttaagtcacgttggg 186  Q
    |||||||||| |||| | ||||||||||||||| |||| ||||||||||    
T  19478793 acttaactcacgttgtatttaacacctgcgtgacttaactcacgttggg 19478745  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 87 - 147
Target Start/End: Complemental strand, 29403169 - 29403109
Alignment:
Q  87 tcaccttgaactccaacgtgagttaactcacgctcattacaggtcaacataacttaactca 147  Q
    |||| |||||||  |||||||||||||||||||||||||||||||||| | ||||||||||    
T  29403169 tcacattgaactttaacgtgagttaactcacgctcattacaggtcaacgtgacttaactca 29403109  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 231
Target Start/End: Original strand, 24208381 - 24208506
Alignment:
Q  106 gagttaactcacgctcattacaggtcaacataacttaactcatgttggacttaacacctgcgtgatttaagtcacgttgggcctgtgtccactaccagaa 205  Q
    |||||||||| | |||||||||| ||||  | ||||||||||  ||||  ||||||| || |||| | ||||||||||||| || |||||||||| ||||    
T  24208381 gagttaactctcactcattacagatcaatgtgacttaactcacattgggtttaacacatgtgtgagtaaagtcacgttgggtctatgtccactactagaa 24208480  T
Q  206 tagtagaaacacatttccccctaatt 231  Q
     |  ||||||||||||  ||||||||    
T  24208481 caaaagaaacacatttttccctaatt 24208506  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 83 - 143
Target Start/End: Original strand, 9249834 - 9249894
Alignment:
Q  83 taagtcaccttgaactccaacgtgagttaactcacgctcattacaggtcaacataacttaa 143  Q
    |||||||| ||||  ||||||||||||||||||| ||||||||||||||||| | ||||||    
T  9249834 taagtcacgttgacttccaacgtgagttaactcatgctcattacaggtcaacgtgacttaa 9249894  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 83 - 147
Target Start/End: Complemental strand, 28197466 - 28197402
Alignment:
Q  83 taagtcaccttgaactccaacgtgagttaactcacgctcattacaggtcaacataacttaactca 147  Q
    |||||||| || |||||||||||||||||||||||||||| ||| ||||||| | | ||||||||    
T  28197466 taagtcacgttcaactccaacgtgagttaactcacgctcactactggtcaacgtgagttaactca 28197402  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 83
Target Start/End: Complemental strand, 14612715 - 14612654
Alignment:
Q  22 atgaaaattgctcttctaccatcaagatttgatcaatcccatacaaactgacgaaaatacct 83  Q
    ||||||||||||||||| ||||| | | ||| ||| | ||||||||||| ||||||||||||    
T  14612715 atgaaaattgctcttctcccatccaaaattgctcacttccatacaaactaacgaaaatacct 14612654  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 80
Target Start/End: Complemental strand, 9488488 - 9488431
Alignment:
Q  23 tgaaaattgctcttctaccatcaagatttgatcaatcccatacaaactgacgaaaata 80  Q
    |||||||||||||||| ||||||||||||| | | || ||||||||||||||||||||    
T  9488488 tgaaaattgctcttcttccatcaagatttgcttactctcatacaaactgacgaaaata 9488431  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 9488141 - 9488199
Alignment:
Q  24 gaaaattgctcttctaccatcaagatttgatcaatcccatacaaactgacgaaaatacc 82  Q
    ||||||||| ||||| ||||||||||||| ||| ||| ||||||||||| |||||||||    
T  9488141 gaaaattgcccttctcccatcaagatttgctcactcctatacaaactgatgaaaatacc 9488199  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 81
Target Start/End: Original strand, 24536802 - 24536859
Alignment:
Q  24 gaaaattgctcttctaccatcaagatttgatcaatcccatacaaactgacgaaaatac 81  Q
    ||||||||||||| | |||||||| |||| ||| ||||||||||||||||||||||||    
T  24536802 gaaaattgctcttttcccatcaagttttgctcactcccatacaaactgacgaaaatac 24536859  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 12350056 - 12349998
Alignment:
Q  24 gaaaattgctcttctaccatcaagatttgatcaatcccatacaaactgacgaaaatacc 82  Q
    ||||||||||||||| ||||||||||||| ||| || |||| |||||||| ||||||||    
T  12350056 gaaaattgctcttctcccatcaagatttggtcactctcataaaaactgacaaaaatacc 12349998  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 12869994 - 12869936
Alignment:
Q  24 gaaaattgctcttctaccatcaagatttgatcaatcccatacaaactgacgaaaatacc 82  Q
    ||||||||||||||| |||| | |||||| ||| ||||||||||| |||||||||||||    
T  12869994 gaaaattgctcttcttccattatgatttgttcattcccatacaaattgacgaaaatacc 12869936  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 83
Target Start/End: Complemental strand, 31731244 - 31731185
Alignment:
Q  24 gaaaattgctcttctaccatcaagatttgatcaatcccatacaaactgacgaaaatacct 83  Q
    ||||||| ||||||| ||||||||||||| ||| ||| |||||||||  |||||||||||    
T  31731244 gaaaatttctcttctcccatcaagatttgctcactccaatacaaactagcgaaaatacct 31731185  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 146
Target Start/End: Original strand, 5473542 - 5473588
Alignment:
Q  100 caacgtgagttaactcacgctcattacaggtcaacataacttaactc 146  Q
    ||||||||||||||||| ||||||| ||||||||| | |||||||||    
T  5473542 caacgtgagttaactcatgctcatttcaggtcaacgtgacttaactc 5473588  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 37289661 - 37289719
Alignment:
Q  24 gaaaattgctcttctaccatcaagatttgatcaatcccatacaaactgacgaaaatacc 82  Q
    ||||||||||||||| ||||||||||||| |||  |||||||||||| || ||||||||    
T  37289661 gaaaattgctcttctcccatcaagatttgctcacccccatacaaactaacaaaaatacc 37289719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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