View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0897_low_8 (Length: 237)
Name: NF0897_low_8
Description: NF0897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0897_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 3762650 - 3762858
Alignment:
| Q |
1 |
atgcagatgcatagaatccttgagcttttccaacaagtttagaactcagttctggtcctaaagtcaaagggttgtcaatcatgcggactaaaccaaaagc |
100 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3762650 |
atgcagatgcatagaatccttgagctcttccaacaagtttagaactcagttcgggtcctaaagtcaaagggttgtcaatcatgcggactaaaccaaaagc |
3762749 |
T |
|
| Q |
101 |
attaaggccggttgagtgtagtttcaatggtggttgaacaattgtaattgttgtagggttatttccacttagtatgtcgtgccagtagaatctaaaatgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
3762750 |
attaaggccggttgagtgtagtttcaatggtggttgaacaattgtaattgttgtagggttatttccacttagtatgtcatgccagtagaatctaaaatgg |
3762849 |
T |
|
| Q |
201 |
cttagtttt |
209 |
Q |
| |
|
||||||||| |
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|
| T |
3762850 |
cttagtttt |
3762858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 3755538 - 3755740
Alignment:
| Q |
1 |
atgcagatgcatagaatccttgagcttttccaacaagtttagaactcagttctggtcctaaagtcaaagggttgtcaatcatgcggactaaaccaaaagc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||| ||| | |||||||||||| ||||||||||| |||||||||||| ||||||| || |
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| T |
3755538 |
atgcagatgcatagaatccttgagcttttccaacaatcttagaattcaactgtggtcctaaagttaaagggttgtcgatcatgcggactgaaccaaaggc |
3755637 |
T |
|
| Q |
101 |
attaaggccggttgagtgtagtttcaatggtggttgaacaattgtaattgttgtagggttatttccacttagtatgtcgtgccagtagaatctaaaatgg |
200 |
Q |
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| | |||||||| |||||||| ||||||| | |||| || || || |||||||| |||||||| | ||||||||||||||||||||| ||||| |
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| T |
3755638 |
agt------ggttgagtttagtttcattggtggtgggacaactgcaactgaagtagggttttttccactcactatgtcgtgccagtagaatctgaaatga |
3755731 |
T |
|
| Q |
201 |
cttagtttt |
209 |
Q |
| |
|
||||||||| |
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|
| T |
3755732 |
cttagtttt |
3755740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 9 - 209
Target Start/End: Original strand, 3771304 - 3771498
Alignment:
| Q |
9 |
gcatagaatccttgagcttttccaacaagtttagaactcagttctggtcctaaagtcaaagggttgtcaatcatgcggactaaaccaaaagcattaaggc |
108 |
Q |
| |
|
|||| ||| ||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||| | |
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| T |
3771304 |
gcatcgaacccttgagattttccaacaagcttagaactcagttctggtcctaaagttaaagggttgtcgatcatgcggactgaaccaaaagcagt----- |
3771398 |
T |
|
| Q |
109 |
cggttgagtgtagtttcaatggtggttgaacaattgtaattgttgtagggttatttccacttagtatgtcgtgccagtagaatctaaaatggcttagttt |
208 |
Q |
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||||| || |||||||| ||||||| |||||||| | | | | |||||| |||||||| ||| ||||||||||||||||| ||||| |||||||| |
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| T |
3771399 |
-ggttgtgtttagtttcattggtggtggaacaattattaccgaaggagggttttttccactcgctatctcgtgccagtagaatctgaaatgacttagttt |
3771497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 3 - 100
Target Start/End: Original strand, 3781046 - 3781143
Alignment:
| Q |
3 |
gcagatgcatagaatccttgagcttttccaacaagtttagaactcagttctggtcctaaagtcaaagggttgtcaatcatgcggactaaaccaaaagc |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |||||||||||||||||| || ||||||||||| |
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| T |
3781046 |
gcagatgcatagaatccttgagctcttccaacaagcttagaactcagttctggtcctaaagttaaagggttgtcaatcatgttaaccaaaccaaaagc |
3781143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 3 - 98
Target Start/End: Original strand, 3776733 - 3776828
Alignment:
| Q |
3 |
gcagatgcatagaatccttgagcttttccaacaagtttagaactcagttctggtcctaaagtcaaagggttgtcaatcatgcggactaaaccaaaa |
98 |
Q |
| |
|
|||||||||||||||||||||||| | ||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||| |||||||||||| |
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| T |
3776733 |
gcagatgcatagaatccttgagctctaccaacaagtttagaactcaattcgggtcctaaagttaaagggttgtcaatcatgctaactaaaccaaaa |
3776828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 3745854 - 3746052
Alignment:
| Q |
1 |
atgcagatgcatagaatccttgagcttttccaacaagtttagaactcagttctggtcctaaagtcaaagggttgtcaatcatgcggactaaaccaaaagc |
100 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||| |||||||||| || |||||||||||| |||||||||||||| ||| |||||||||||||| |
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| T |
3745854 |
atgcagatgcatacaacccttgagcttttccaacaagcttagaactcatttttggtcctaaagttaaagggttgtcaataatgttgactaaaccaaaaga |
3745953 |
T |
|
| Q |
101 |
attaaggccggttgagtgtagtttcaatggtggttgaacaattgtaattgttgtagggttatttccacttagtatgtcgtgccagtagaatctaaaatgg |
200 |
Q |
| |
|
| || |||| || ||| ||||||||| || | |||| |||||||| |||||||| |||||||| | ||||| ||||| ||||||| ||||| |
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|
| T |
3745954 |
agta------gttgtgtttagcttcaatggtagtggtacaactgtaattgaagtagggttttttccactcatgatgtcatgccaaaagaatctgaaatga |
3746047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 3751671 - 3751873
Alignment:
| Q |
1 |
atgcagatgcatagaatccttgagcttttccaacaagtttagaactcagttctggtcctaaagtcaaagggttgtcaatcatgcggactaaaccaaaagc |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |||||||||| || |||||||| ||||||||||| |||| |||| |||| |||||||| |
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| T |
3751671 |
atgcagatgcatagaaaccttgagcttttccaacaagcttagaactcaattgtggtcctatagtcaaagggtcatcaaacatgttgactgaaccaaaa-- |
3751768 |
T |
|
| Q |
101 |
attaaggccggttgagtgtagtttcaatggtggttgaacaattgtaattgttgtagggttatttccacttagtatgtcgtgccagtagaatctaaaatgg |
200 |
Q |
| |
|
|||| ||||| || ||| |||||||||||| ||||||||||||||| || || || || ||||| | || || ||||| |||||||| ||||| |
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| T |
3751769 |
--taag--tggttgtgtttagcttcaatggtggtggaacaattgtaattgcagtgggatttttcccactcaagatatcatgccaatagaatctgaaatga |
3751864 |
T |
|
| Q |
201 |
cttagtttt |
209 |
Q |
| |
|
||||||||| |
|
|
| T |
3751865 |
cttagtttt |
3751873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 3767066 - 3767162
Alignment:
| Q |
1 |
atgcagatgcatagaatccttgagcttttccaacaagtttagaactcagttctggtcctaaagtcaaagggttgtcaatcatgcggactaaaccaaa |
97 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||| ||| | |||||||||||| ||||||||||| |||||||||||| ||||||| |
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|
| T |
3767066 |
atgcagatgcatagaatccttgagcttttccaacaatcttagaattcaactgtggtcctaaagttaaagggttgtcgatcatgcggactgaaccaaa |
3767162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 205
Target Start/End: Complemental strand, 25985461 - 25985274
Alignment:
| Q |
9 |
gcatagaatccttgagcttttccaacaagtttagaactcagttctggtcctaaagtcaaagggttgtcaatcatgcggactaaaccaaaagcattaaggc |
108 |
Q |
| |
|
|||||||||||||| ||||||||||| | ||| ||||||| || |||||||| || |||||||| ||||||||| ||||||||||||||| | |
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|
| T |
25985461 |
gcatagaatccttgtgcttttccaaccaatttggaactcaattgaggtcctaaggttaaagggttctcaatcatgttaactaaaccaaaagcagt----- |
25985367 |
T |
|
| Q |
109 |
cggttgagtgtagtttcaatggtggttgaacaattgtaattgttgtagggttatttccacttagtatgtcgtgccagtagaatctaaaatggcttag |
205 |
Q |
| |
|
|||||||| |||||| |||||| ||||||||| |||| | |||||| |||||||| | |||||| ||||| |||||| | ||||||||||| |
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|
| T |
25985366 |
-ggttgagt---ttttcaaaggtggtggaacaattggtattgaagaagggttgtttccactaactatgtcatgccaatagaattttaaatggcttag |
25985274 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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