View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0898_high_5 (Length: 301)
Name: NF0898_high_5
Description: NF0898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0898_high_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 27 - 292
Target Start/End: Original strand, 44311896 - 44312161
Alignment:
| Q |
27 |
atacaaaacataataaactcgagcaatccatagcatgatgcggacattgcctagttaagtcattgcatatattatgattaaagtgcagttcggataaaaa |
126 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44311896 |
atacaaaacataataaactcgagcaatccatagcatgatgcggacattgcctagttaagtcattgcatatattatgattaaagtgcagttcggataaaaa |
44311995 |
T |
|
| Q |
127 |
caatatcagaattattaacaacaaataacnnnnnnnnnnnntgttattttgcctctgtaagttatcttaaaatccagttttgcttttaacatgacatttg |
226 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44311996 |
caatatcagaattattaacaacaaataacaaaaaataaaaatgttattttgcctctgtaagttatcttaaaatccagttttgcttttaacatgacatttg |
44312095 |
T |
|
| Q |
227 |
cactaaatgttaaacttaagaatcaaatagataatcttgacaccagagataggatcaactgttaaa |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
44312096 |
cactaaatgttaaacttaagaatcaaatagataatcttgacagcagagataggatcaactgttaaa |
44312161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 212 - 292
Target Start/End: Original strand, 44306223 - 44306305
Alignment:
| Q |
212 |
ttaacatgacatttgcactaaatgttaaacttaagaatcaaatagataatcttgacacc--agagataggatcaactgttaaa |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| | |||||||||||||| ||||||| |
|
|
| T |
44306223 |
ttaacatgacatttgcactaaatgttaaacttaagaatcacatagacaatcttgacagcagagagataggatcaagtgttaaa |
44306305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 212 - 292
Target Start/End: Original strand, 43895799 - 43895879
Alignment:
| Q |
212 |
ttaacatgacatttgcactaaatgttaaacttaagaatcaaatagataatcttgacaccagagataggatcaactgttaaa |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||| |||||||||||||| ||||||| |
|
|
| T |
43895799 |
ttaacatgacatttgcactaaatgttaaacttatgaatcacatagacaatcttgacggcagagataggatcaggtgttaaa |
43895879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 58 - 117
Target Start/End: Original strand, 44300979 - 44301041
Alignment:
| Q |
58 |
agcatgatgcggacattgcctagttaagtcattgc--atatattatgat-taaagtgcagttc |
117 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||| |||||||||||| |||||||||||| |
|
|
| T |
44300979 |
agcatgatgcggacactgcctaattaagtcattgcagatatattatgataaaaagtgcagttc |
44301041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 244
Target Start/End: Original strand, 44301201 - 44301230
Alignment:
| Q |
215 |
acatgacatttgcactaaatgttaaactta |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
44301201 |
acatgacatttgcactaaatgttaaactta |
44301230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 231 - 292
Target Start/End: Complemental strand, 8159474 - 8159413
Alignment:
| Q |
231 |
aaatgttaaacttaagaatcaaatagataatcttgacaccagagataggatcaactgttaaa |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||| |
|
|
| T |
8159474 |
aaatgttaaacttaagaatcaaatagataatattgacaacagagataggatcaagtgttaaa |
8159413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 475 times since January 2019
Visitors: 6704