View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0898_low_1 (Length: 420)

Name: NF0898_low_1
Description: NF0898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0898_low_1
NF0898_low_1
[»] chr8 (2 HSPs)
chr8 (29-420)||(596028-596419)
chr8 (93-179)||(33402664-33402750)
[»] chr4 (1 HSPs)
chr4 (29-418)||(17373628-17374017)
[»] chr6 (12 HSPs)
chr6 (211-394)||(6608704-6608887)
chr6 (77-174)||(31121296-31121393)
chr6 (211-272)||(6613295-6613356)
chr6 (92-156)||(6613182-6613246)
chr6 (77-143)||(6631844-6631910)
chr6 (206-383)||(6631970-6632147)
chr6 (211-272)||(9145868-9145929)
chr6 (211-272)||(9180503-9180564)
chr6 (223-275)||(22823229-22823281)
chr6 (77-156)||(22823342-22823421)
chr6 (93-143)||(32258442-32258492)
chr6 (103-136)||(30459744-30459777)
[»] chr7 (7 HSPs)
chr7 (103-178)||(5922349-5922424)
chr7 (103-179)||(47401758-47401834)
chr7 (103-178)||(5931480-5931555)
chr7 (103-179)||(10973386-10973462)
chr7 (103-179)||(10999788-10999864)
chr7 (93-180)||(19297677-19297764)
chr7 (103-143)||(11041269-11041309)
[»] chr1 (2 HSPs)
chr1 (103-137)||(25728582-25728616)
chr1 (103-136)||(25183929-25183962)


Alignment Details
Target: chr8 (Bit Score: 376; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 29 - 420
Target Start/End: Complemental strand, 596419 - 596028
Alignment:
Q  29 agctattagccttaccgaaaaagttactattaccaatgatgtaactgatccaactcccaaaaccatcacttttaattgcaaatccaaagatgatgatctt 128  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  596419 agctattagccttactgaaaaagttactattaccaatgatgtaactgatccaactcccaaaaccatcacttttaattgcaaatccaaagatgatgatctt 596320  T
Q  129 ggagttcacacactcatgtttggagaaatttacaggttttcattcaggccaaaaatattatatccaattgttcatccaacggtattctcctgcagtttta 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  596319 ggagttcacacactcatgtttggagaaatttacaggttttcattcagaccaaaaatattatatccaattgttcatccaacggtattctcctgcagtttta 596220  T
Q  229 catggcttggtaacccccatcgtcattattttgacatttacgaccaatcacgtgacaggtgcttccattgcaattggaaaataaacttaaatggaggctg 328  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  596219 catggcttggtaacccccatcgtcattattttgacatttacgaccaatcacgtgacaggtgcttccattgcgattggaaaataaacttaaatggaggctg 596120  T
Q  329 tttgaacggtgataagtgtcgtccttggaaaagtgtccaattaatggatgcataaaacacttcaaaatggctgcaagggaatggtgtataac 420  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  596119 tttgaacggtgataagtgtcgtccttggaaaagtgtccaattaatggttgcataaaacacttcaaaatggctgcaagggaatggtgtataac 596028  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 93 - 179
Target Start/End: Complemental strand, 33402750 - 33402664
Alignment:
Q  93 atcacttttaattgcaaatccaaagatgatgatcttggagttcacacactcatgtttggagaaatttacaggttttcattcaggcca 179  Q
    ||||||||| |||||||||| ||| | |||||||||||| |||||||||||| |||||||| || |||||  |||||||| ||||||    
T  33402750 atcacttttcattgcaaatcaaaaaacgatgatcttggatttcacacactcacgtttggaggaagttacacattttcatttaggcca 33402664  T

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Target: chr4 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 29 - 418
Target Start/End: Complemental strand, 17374017 - 17373628
Alignment:
Q  29 agctattagccttaccgaaaaagttactattaccaatgatgtaactgatccaactcccaaaaccatcacttttaattgcaaatccaaagatgatgatctt 128  Q
    |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  17374017 agctattagccttaccgaaaaagttactatcaccaataatgtaactgatccaactcccaaaaccatcacttttaattgcaaatctaaagatgatgatctt 17373918  T
Q  129 ggagttcacacactcatgtttggagaaatttacaggttttcattcaggccaaaaatattatatccaattgttcatccaacggtattctcctgcagtttta 228  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17373917 ggagttcatacactcatgtttggagaaatttacaggttttcattcagaccaaaaatattatatccaattgttcatccaacggtattctcctgcagtttta 17373818  T
Q  229 catggcttggtaacccccatcgtcattattttgacatttacgaccaatcacgtgacaggtgcttccattgcaattggaaaataaacttaaatggaggctg 328  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  17373817 catggcttggtaacccccatcgtcattattttgacatttacgaccaatcacgtgacaggtgcttccattgcaattggaaaataaacttaaatggaggatg 17373718  T
Q  329 tttgaacggtgataagtgtcgtccttggaaaagtgtccaattaatggatgcataaaacacttcaaaatggctgcaagggaatggtgtata 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17373717 tttgaacggtgataagtgtcgtccttggaaaagtgtccaattaatggatgcataaaacacttcaaaatggctgcaagggaatggtgtata 17373628  T

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Target: chr6 (Bit Score: 64; Significance: 8e-28; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 211 - 394
Target Start/End: Original strand, 6608704 - 6608887
Alignment:
Q  211 tattctcctgcagttttacatggcttggtaacccccatcgtcattattttgacatttacgaccaatcacgtgacaggtgcttccattgcaattggaaaat 310  Q
    |||||||||||||||||||||||| |   |||||||||  | ||||| |||||||||||||||||   ||| |||  |||   |||||||  |||  |||    
T  6608704 tattctcctgcagttttacatggcctcaaaacccccatgtttattatcttgacatttacgaccaaaaccgtcacaattgcaatcattgcacatggggaat 6608803  T
Q  311 aaacttaaatggaggctgtttgaacggtgataagtgtcgtccttggaaaagtgtccaattaatggatgcataaaacacttcaaa 394  Q
    |||| ||||||||||||||||||||| | | ||||||  ||||||||||||| |||||||||||||||| || |||||||||||    
T  6608804 aaacgtaaatggaggctgtttgaacgatcaaaagtgtgttccttggaaaagtatccaattaatggatgcgtacaacacttcaaa 6608887  T

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Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 77 - 174
Target Start/End: Original strand, 31121296 - 31121393
Alignment:
Q  77 tccaactcccaaaaccatcacttttaattgcaaatccaaagatgatgatcttggagttcacacactcatgtttggagaaatttacaggttttcattca 174  Q
    ||||||||| | |||||| ||| || |||||||||||||| |||||||||||||| |||||||| ||||||||||| ||| ||||  |||||||||||    
T  31121296 tccaactccaacaaccatgactgttcattgcaaatccaaaaatgatgatcttggatttcacacaatcatgtttggacaaagttacgtgttttcattca 31121393  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 211 - 272
Target Start/End: Original strand, 6613295 - 6613356
Alignment:
Q  211 tattctcctgcagttttacatggcttggtaacccccatcgtcattattttgacatttacgac 272  Q
    |||||| ||||||||||||||||| ||| ||||| ||||| |||||| ||||||||||||||    
T  6613295 tattcttctgcagttttacatggcctggaaacccgcatcgacattatcttgacatttacgac 6613356  T

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Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 92 - 156
Target Start/End: Original strand, 6613182 - 6613246
Alignment:
Q  92 catcacttttaattgcaaatccaaagatgatgatcttggagttcacacactcatgtttggagaaa 156  Q
    ||||||| || |||||||||| |||||||| |||||||||| |||||||||||||  ||||||||    
T  6613182 catcactgttcattgcaaatctaaagatgacgatcttggagatcacacactcatgcctggagaaa 6613246  T

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Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 77 - 143
Target Start/End: Original strand, 6631844 - 6631910
Alignment:
Q  77 tccaactcccaaaaccatcacttttaattgcaaatccaaagatgatgatcttggagttcacacactc 143  Q
    ||||||||||| || |||||||||| |||| ||||| | |||||| ||||||||| |||||||||||    
T  6631844 tccaactcccacaaacatcacttttcattgtaaatctagagatgacgatcttggatttcacacactc 6631910  T

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Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 206 - 383
Target Start/End: Original strand, 6631970 - 6632147
Alignment:
Q  206 aacggtattctcctgcagttttacatggcttggtaacccccatcgtcattattttgacatttacgaccaatcacgtgacaggtgcttccattgcaattgg 305  Q
    |||| |||||| ||||||||||||||||| ||| ||||| || | ||||||| ||||||| ||||| |||   |||||||  ||||  | |||||  |||    
T  6631970 aacgttattcttctgcagttttacatggcctggaaaccctcaacttcattatcttgacatctacgatcaagttcgtgacaactgctatcgttgcagatgg 6632069  T
Q  306 aaaataaacttaaatggaggctgtttgaacggtgataagtgtcgtccttggaaaagtgtccaattaatggatgcataa 383  Q
    | |||||||  | ||||||| |||||||||    ||||||||  |   ||||| |||||| |||||||||||||||||    
T  6632070 acaataaacaaagatggaggttgtttgaacacacataagtgttataagtggaacagtgtcaaattaatggatgcataa 6632147  T

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Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 211 - 272
Target Start/End: Complemental strand, 9145929 - 9145868
Alignment:
Q  211 tattctcctgcagttttacatggcttggtaacccccatcgtcattattttgacatttacgac 272  Q
    |||||| |||| |||||||||||| ||  |||||| ||||||||||| ||||||||||||||    
T  9145929 tattcttctgcggttttacatggcctgaaaacccctatcgtcattatcttgacatttacgac 9145868  T

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Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 211 - 272
Target Start/End: Original strand, 9180503 - 9180564
Alignment:
Q  211 tattctcctgcagttttacatggcttggtaacccccatcgtcattattttgacatttacgac 272  Q
    |||||| |||| |||||||||||| ||  |||||| ||||||||||| ||||||||||||||    
T  9180503 tattcttctgcggttttacatggcctgaaaacccctatcgtcattatcttgacatttacgac 9180564  T

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Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 275
Target Start/End: Complemental strand, 22823281 - 22823229
Alignment:
Q  223 gttttacatggcttggtaacccccatcgtcattattttgacatttacgaccaa 275  Q
    |||||||||||| ||| ||||| ||||| |||||| |||||||||||||||||    
T  22823281 gttttacatggcctggaaacccacatcgacattatcttgacatttacgaccaa 22823229  T

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Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 77 - 156
Target Start/End: Complemental strand, 22823421 - 22823342
Alignment:
Q  77 tccaactcccaaaaccatcacttttaattgcaaatccaaagatgatgatcttggagttcacacactcatgtttggagaaa 156  Q
    ||||||||| | || ||||||| ||  ||||||||| ||||||||  ||||||||| |||||||||||||  ||||||||    
T  22823421 tccaactcctacaaacatcactgttcgttgcaaatctaaagatgacaatcttggagatcacacactcatgcctggagaaa 22823342  T

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Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 93 - 143
Target Start/End: Complemental strand, 32258492 - 32258442
Alignment:
Q  93 atcacttttaattgcaaatccaaagatgatgatcttggagttcacacactc 143  Q
    |||||| || |||||||||| |||||||| ||||||||| |||||||||||    
T  32258492 atcactcttcattgcaaatctaaagatgaagatcttggatttcacacactc 32258442  T

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Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 136
Target Start/End: Complemental strand, 30459777 - 30459744
Alignment:
Q  103 attgcaaatccaaagatgatgatcttggagttca 136  Q
    |||||||||||||||| |||||||||||||||||    
T  30459777 attgcaaatccaaagaggatgatcttggagttca 30459744  T

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Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 103 - 178
Target Start/End: Complemental strand, 5922424 - 5922349
Alignment:
Q  103 attgcaaatccaaagatgatgatcttggagttcacacactcatgtttggagaaatttacaggttttcattcaggcc 178  Q
    |||||||||| |||||||||||||||||| |||||||| ||| |||| |||||||||||| ||||||||| |||||    
T  5922424 attgcaaatcaaaagatgatgatcttggatttcacacaatcaagtttagagaaatttacatgttttcatttaggcc 5922349  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 103 - 179
Target Start/End: Original strand, 47401758 - 47401834
Alignment:
Q  103 attgcaaatccaaagatgatgatcttggagttcacacactcatgtttggagaaatttacaggttttcattcaggcca 179  Q
    ||||||||||||||||||| | ||||| | |||||||||| ||||||||||||| ||||| ||||||||||| ||||    
T  47401758 attgcaaatccaaagatgacggtcttgaatttcacacacttatgtttggagaaagttacatgttttcattcaagcca 47401834  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 103 - 178
Target Start/End: Complemental strand, 5931555 - 5931480
Alignment:
Q  103 attgcaaatccaaagatgatgatcttggagttcacacactcatgtttggagaaatttacaggttttcattcaggcc 178  Q
    |||||||||| |||||||||||||||||| |||||||| ||| |||| |||||||||| |  |||||||| |||||    
T  5931555 attgcaaatcaaaagatgatgatcttggatttcacacaatcaagtttagagaaatttatatattttcatttaggcc 5931480  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 103 - 179
Target Start/End: Original strand, 10973386 - 10973462
Alignment:
Q  103 attgcaaatccaaagatgatgatcttggagttcacacactcatgtttggagaaatttacaggttttcattcaggcca 179  Q
    |||||||||| |||||||| ||||||||| ||||||||||||   |||||||||  |||| ||||||||||| ||||    
T  10973386 attgcaaatctaaagatgacgatcttggatttcacacactcacaattggagaaaaatacacgttttcattcaagcca 10973462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 179
Target Start/End: Original strand, 10999788 - 10999864
Alignment:
Q  103 attgcaaatccaaagatgatgatcttggagttcacacactcatgtttggagaaatttacaggttttcattcaggcca 179  Q
    |||| |||||||||||||| ||||||||| ||||||||||||   |||||||||  ||||  |||||||||| ||||    
T  10999788 attgtaaatccaaagatgacgatcttggatttcacacactcacaattggagaaaaatacacattttcattcacgcca 10999864  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 93 - 180
Target Start/End: Original strand, 19297677 - 19297764
Alignment:
Q  93 atcacttttaattgcaaatccaaagatgatgatcttggagttcacacactcatgtttggagaaatttacaggttttcattcaggccaa 180  Q
    |||||| || |||| ||||| |||||||| ||| | ||| |||||||||||| | ||| ||||| ||||| ||||||||||| |||||    
T  19297677 atcactcttcattgtaaatcgaaagatgacgatttaggatttcacacactcaagcttgaagaaagttacatgttttcattcaagccaa 19297764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 143
Target Start/End: Complemental strand, 11041309 - 11041269
Alignment:
Q  103 attgcaaatccaaagatgatgatcttggagttcacacactc 143  Q
    |||||||||| |||||||||||||||||| ||||| |||||    
T  11041309 attgcaaatcaaaagatgatgatcttggatttcactcactc 11041269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 103 - 137
Target Start/End: Complemental strand, 25728616 - 25728582
Alignment:
Q  103 attgcaaatccaaagatgatgatcttggagttcac 137  Q
    |||||||||| ||||||||||||||||||||||||    
T  25728616 attgcaaatctaaagatgatgatcttggagttcac 25728582  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 136
Target Start/End: Original strand, 25183929 - 25183962
Alignment:
Q  103 attgcaaatccaaagatgatgatcttggagttca 136  Q
    |||||||||| |||||||||||||||||||||||    
T  25183929 attgcaaatctaaagatgatgatcttggagttca 25183962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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