View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0898_low_2 (Length: 415)
Name: NF0898_low_2
Description: NF0898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0898_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 172; Significance: 3e-92; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 212 - 399
Target Start/End: Complemental strand, 42103486 - 42103299
Alignment:
| Q |
212 |
ttaacattgacaagtcttaaattttcggaacttgaaaaaccgatgaattttcttcaattaatgtatcaattgttaatgggctggctgaatatttaggtta |
311 |
Q |
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| T |
42103486 |
ttaacattgacaagtcttaaattttcggaacttgaagaaccgatgaattttcttcaattaatgtatcaattgttaatgggctggctgaatatttaggtta |
42103387 |
T |
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| Q |
312 |
atttctttgggataggaatgctgcaatgcttgcttctaaactatttaataaattatcagtgtttttggtcacctatgttgttttctta |
399 |
Q |
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| T |
42103386 |
atttctttgagataggaatgatgcaatgcttgcttctaaattatttaataaattatcagtgtttttggtcacctatgttgttttctta |
42103299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 84 - 207
Target Start/End: Complemental strand, 42103663 - 42103540
Alignment:
| Q |
84 |
taattagtttctgcgaattgtgactcgacttatttgttgtgttgtgtttgtttcatcnnnnnnncttccaggaactacagaaattcaagcacttgttgtt |
183 |
Q |
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| T |
42103663 |
taattagttactgcgaattgtgactcgacttatttgttgtgttgtgtttgtttcatctttttttcttccaggaactacagaaattcaagcacttgttgtt |
42103564 |
T |
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| Q |
184 |
taaatgcgtcaagttttacagatt |
207 |
Q |
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| T |
42103563 |
taaatgcatcaagttttacagatt |
42103540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 288 - 342
Target Start/End: Complemental strand, 42112582 - 42112528
Alignment:
| Q |
288 |
tgggctggctgaatatttaggttaatttctttgggataggaatgctgcaatgctt |
342 |
Q |
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| T |
42112582 |
tgggctggctgaatatttaggttaatttctttgggataggattgctgcaatgctt |
42112528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 149 - 219
Target Start/End: Complemental strand, 42112804 - 42112734
Alignment:
| Q |
149 |
ttccaggaactacagaaattcaagcacttgttgtttaaatgcgtcaagttttacagattgatattaacatt |
219 |
Q |
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| T |
42112804 |
ttccaggaactacagaaattcaaggacttgttgttcgaatgcgtgaaggttcgcagattgatattaacatt |
42112734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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