View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0898_low_3 (Length: 370)
Name: NF0898_low_3
Description: NF0898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0898_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 24 - 358
Target Start/End: Original strand, 5888730 - 5889064
Alignment:
| Q |
24 |
tcatcatcatctccttcttggtttgactttgattccatataggcatttaactcagctttcaaatcaagaagcaacacagaagctttactatgtttagatt |
123 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
5888730 |
tcatcatcatctccttcttggtttgactttgattccatataggcatttaactcagctttcaaatcaagaagcaacgcagaagctttactatgtttagatt |
5888829 |
T |
|
| Q |
124 |
taagatccatagcaaacaaaattttttgattgagtttttctagttcttgttcttcttgtttaagttccctctcccaattgagagaatcttgatctcttgc |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5888830 |
taagatccatagcaaacaaaattttttgattgagtttttctagttcttgttcttcttgttttagttccctctcccaattgagagaatcttgatctcttgc |
5888929 |
T |
|
| Q |
224 |
catgactgttcctattctgtgttcttctgcttccatatgtgcagaatgtgctgattccaaagactcttttgtggcaatcaactcaatagtcaaatcttca |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5888930 |
catgactgttcctattctgtgttcttctgcttccatatgtgcagaatgtgctgattccaaagactcttttgtggcaatcaactcaatagtcaaatcttca |
5889029 |
T |
|
| Q |
324 |
actgtcttttctacttgcttcgatgcagcaacagc |
358 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||| |
|
|
| T |
5889030 |
accgtcttttctacttgcttcgatgcagcaacagc |
5889064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 27 - 349
Target Start/End: Complemental strand, 46806149 - 46805827
Alignment:
| Q |
27 |
tcatcatctccttcttggtttgactttgattccatataggcatttaactcagctttcaaatcaagaagcaacacagaagctt-tactatgtttagattta |
125 |
Q |
| |
|
|||||||| |||||||| ||| |||||||||||||||| || |||| | ||||||||||||||| ||||| |||| ||| | | | |||||||||| |
|
|
| T |
46806149 |
tcatcatcaccttcttgctttaactttgattccatataaacagttaatttagctttcaaatcaagcagcaaaccagaggctgcttcca-gtttagatttg |
46806051 |
T |
|
| Q |
126 |
agatccatagcaaacaaaattttttgattgagtttttctagttcttgttcttcttgtttaagttccctctcccaattgagagaatcttgatctcttgcca |
225 |
Q |
| |
|
|||||| | ||| |||| |||| | ||||| | | | || |||| |||| | |||||||||||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
46806050 |
agatcctttgcagacaacatttgctcattgattctctggagctcttcttctgcctgtttaagttccttctcccaattgagtgaatcttgatctcttgcca |
46805951 |
T |
|
| Q |
226 |
tgactgttcctattctgtgttcttctgcttccatatgtgcagaatgtgctgattccaaagactcttttgtggcaatcaactcaatagtcaaatcttcaac |
325 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||| ||||||| ||| || | || || |||||||||||||| || | |||||||| |||||||| || |
|
|
| T |
46805950 |
tgactgttcctattctttgttcctctgcttccaagtgtgcagcatgagcagtctctaatgactcttttgtggctattagttcaatagttaaatcttccac |
46805851 |
T |
|
| Q |
326 |
tgtcttttctacttgcttcgatgc |
349 |
Q |
| |
|
|| ||| ||||||| ||| ||||| |
|
|
| T |
46805850 |
tgacttctctacttccttggatgc |
46805827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 309 times since January 2019
Visitors: 6702