View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0899_high_17 (Length: 293)
Name: NF0899_high_17
Description: NF0899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0899_high_17 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 24 - 282
Target Start/End: Original strand, 7288158 - 7288416
Alignment:
| Q |
24 |
ttcttaatgtattactgttcttattaatttaaaactgaataaacagggtcatgtcttatattgtttgatgttggattcagagtatagcttgctacttggt |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
7288158 |
ttcttaatgtattactgttcttattaatttaaaattgaataaacagggtcatgtcttatattgtttgatgttggattcagagtttagcttgctacttggt |
7288257 |
T |
|
| Q |
124 |
aacaaaagatttgactttatgaacatagaaatcattgaagctagaggaatcccgaacacgttaagatttaaatacatattaataattttcttaagtgttt |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7288258 |
aacaaaagatttgactttatgaacatagaaatcattgaagctagaggaatcccgaacacgttaagatttaaatacatattaataattttcttaagtgttt |
7288357 |
T |
|
| Q |
224 |
tatgattttattacaccttattgttactaatagtaaatttatctattttactagtgata |
282 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
7288358 |
tatgattttattacaccttattgttactaatagtaaatttatctattttactattgata |
7288416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 242 times since January 2019
Visitors: 6714