View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0899_high_20 (Length: 263)
Name: NF0899_high_20
Description: NF0899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0899_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 15673287 - 15673064
Alignment:
| Q |
1 |
aaaaggagctattttccaagacaaaatagcctatcatcattggtttttgctgggccaatccagctcgagtagtcccttaattacgatggtatatggaccc |
100 |
Q |
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|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |
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| T |
15673287 |
aaaaagagcaattttccaagacaaaatagcctatcatcattggtttttgctgggccaatccagctcgagtagtcacttaattacgatgatatatggaccc |
15673188 |
T |
|
| Q |
101 |
tcgaaattgtactcctgctcccatattttgctaaaaatgatcagtttaccctcttgatacatgaa-----------tgtttttgctaaaccttcgcataa |
189 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||| |
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| T |
15673187 |
tcgaaattgtactcctgcccccatattttgctaaaaatgatcagtttaccctcttgatacatgaatgttacatgaatgtttttgccaaaccttcacataa |
15673088 |
T |
|
| Q |
190 |
ccctatgagggctcttgataccaa |
213 |
Q |
| |
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|||||||||||||||||||||||| |
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|
| T |
15673087 |
ccctatgagggctcttgataccaa |
15673064 |
T |
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