View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0899_high_3 (Length: 516)
Name: NF0899_high_3
Description: NF0899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0899_high_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 1 - 512
Target Start/End: Original strand, 38005583 - 38006094
Alignment:
| Q |
1 |
gcgagattttgttgtaaaacaactcgaatgcaatgctgacgattcgagctcttcgtgttgatcgaacagtgccgtgtggctcaagcgaaggtgataaaac |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38005583 |
gcgagattttgttgtaaaacaactcaaatgcaatgccgacgattcgagctcttcgtgttgatcgaacagtgccgtgtggctcaagcgaaggtgataaaac |
38005682 |
T |
|
| Q |
101 |
aactatgtttagatcagtcgcactgtttttatttactactgctttagattcatgatacacgctagggtgtgacatatcagggatagtaactgtaacagct |
200 |
Q |
| |
|
||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38005683 |
aacgatgtttagatcagtcgcaccgtttttatttactactgctttgaattcatgatacacgctagggtgtgacatatcagggatagtaactgtaacagct |
38005782 |
T |
|
| Q |
201 |
tcaccggcgcgtgagtttgtttcatgcgcgtagagtgctaaaagaacggcttcaaacccggcttgcggttttctatccgcgactcgtgagagataaactc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38005783 |
tcaccggcgcgtgagtttgtttcatgcgcgtatagtgctaaaagaacggcttcaaacccggcttgcggttttctatccgcgactcgtgagagataaactc |
38005882 |
T |
|
| Q |
301 |
cggcgattatagatgagaaagggaggacggagagctggagatcaccgacataggatgggaaagtgtcatagagtaaaggacagagatggttgtcggcagc |
400 |
Q |
| |
|
|||||||||||| | |||| ||||||||| |||||||||||||||||||| |||| |||||||||||||||| || |||| |||| ||||||| |||| |
|
|
| T |
38005883 |
cggcgattataggtaggaaacggaggacggtgagctggagatcaccgacattggattggaaagtgtcatagagccaacgacaaagattgttgtcgccagc |
38005982 |
T |
|
| Q |
401 |
aacagagatgggatggcggaggagggtggagattaagttgtagattaagagtacgttgaggatagagagaggggggattgatgatgtaatggagagtgtg |
500 |
Q |
| |
|
| | ||| |||| |||||||||||||||| |||| |||||||||| |||| ||||||||||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
38005983 |
accggagctgggttggcggaggagggtggcgatttggttgtagattttgagttcgttgaggatagagagaggggtggttgatgatgtaatggagagtgtt |
38006082 |
T |
|
| Q |
501 |
gggttgatgatg |
512 |
Q |
| |
|
||||||| |||| |
|
|
| T |
38006083 |
gggttgacgatg |
38006094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 6 - 512
Target Start/End: Complemental strand, 26462225 - 26461719
Alignment:
| Q |
6 |
attttgttgtaaaacaactcgaatgcaatgctgacgattcgagctcttcgtgttgatcgaacagtgccgtgtggctcaagcgaaggtgataaaacaacta |
105 |
Q |
| |
|
|||||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| | |
|
|
| T |
26462225 |
attttgctgtaaaacaactcgaatgcaatgcctacgattcgagctcttcgtgttgaccgaacagtgccgtgtggctcaagcgaaggcgataaaacaacga |
26462126 |
T |
|
| Q |
106 |
tgtttagatcagtcgcactgtttttatttactactgctttagattcatgatacacgctagggtgtgacatatcagggatagtaactgtaacagcttcacc |
205 |
Q |
| |
|
||||||||||||| |||||||||||||| |||| |||| ||||||||||||||||||||||||| ||| ||||||||||||| ||||| |||||||| |
|
|
| T |
26462125 |
tgtttagatcagttgcactgtttttattgtttactactttggattcatgatacacgctagggtgtgtcatgtcagggatagtaatggtaacggcttcacc |
26462026 |
T |
|
| Q |
206 |
ggcgcgtgagtttgtttcatgcgcgtagagtgctaaaagaacggcttcaaacccggcttgcggttttctatccgcgactcgtgagagataaactccggcg |
305 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||| ||||| |||||| |
|
|
| T |
26462025 |
agcgcgtgacgttgtttcatgcgcgtagagagctaaaagaacagcttcaaacccggcttgcggttttctatcagcgacgcgtgagaggtaaacaccggcg |
26461926 |
T |
|
| Q |
306 |
attatagatgagaaagggaggacggagagctggagatcaccgacataggatgggaaagtgtcatagagtaaaggacagagatggttgtcggcagcaacag |
405 |
Q |
| |
|
|| || | |||| | ||||||| ||| ||||||||| || || ||| |||||||||| ||||| || |||| |||| |||||| | || | | |
|
|
| T |
26461925 |
ataatcgggaggaaacgtaggacggtgagttggagatcagtgatatttgattggaaagtgtcgtagagccaacgacaaagattgttgtcaccggcgccgg |
26461826 |
T |
|
| Q |
406 |
agatgggatggcggaggagggtggagattaagttgtagattaagagtacgttgaggatagagagaggggggattgatgatgtaatggagagtgtggggtt |
505 |
Q |
| |
|
|| |||| |||||||||||||||| |||| |||||||||| | || ||||||||||||||||||||| | ||||||| |||||||||||||| || || |
|
|
| T |
26461825 |
agttgggttggcggaggagggtggcgatttggttgtagatttcgggttcgttgaggatagagagaggggtggttgatgaggtaatggagagtgttggatt |
26461726 |
T |
|
| Q |
506 |
gatgatg |
512 |
Q |
| |
|
|| |||| |
|
|
| T |
26461725 |
gacgatg |
26461719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 924 times since January 2019
Visitors: 6707