View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0899_low_1 (Length: 751)
Name: NF0899_low_1
Description: NF0899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0899_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 574; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 574; E-Value: 0
Query Start/End: Original strand, 9 - 722
Target Start/End: Original strand, 34418935 - 34419648
Alignment:
| Q |
9 |
gagatgaagggaaggacaaggattatgtataggatggaagggatggaggaaacaatgtagagtgtgcgccatgtttggaaggtgtaggcaatgccagaga |
108 |
Q |
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| T |
34418935 |
gagatgaagggaaggacaaggattatgtataggatggaagggatggaggaaacaatgtagagtgtgcgccatgtttggaaggtgtaggcaatgccagaga |
34419034 |
T |
|
| Q |
109 |
gaattgctatgccactcgagaagaagtagaaggtggacattcctgccatgccacgttttgatgggccaatgggctcggtggcaaggacgaaggcgcaaag |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34419035 |
gaattgctatgccactcgagaagaagtagaaggtggacattcctgccatgccacgttttgatgggccaatgggctcggtggcaaggacgaaggcgcaaag |
34419134 |
T |
|
| Q |
209 |
gccaacaccgccagtgctgaaaccggtgaggaggcggaggaggacatagatccaataattaggagagaatgctgttaagcagccaaatatggtgtttagg |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
34419135 |
gccaacaccgccagtgctgaaaccggtgaggaggcggaggaggacatagatccaataattaggggagaatgctgttaagcagccaaatatggtgtttagg |
34419234 |
T |
|
| Q |
309 |
gcacaaacaactatgagagaaccctttcttcctagtgatgaatctgaaaggtgcccaaatactccagctcctgaaatgacaacataaaagtcataagttg |
408 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34419235 |
gcacaaacaactatgagagaaccctttcttcctagtgatgaatctgaaaggtgtccaaatactccagctcctgaaatgacaacataaaagtcataagttg |
34419334 |
T |
|
| Q |
409 |
tttttatgtcatgattattcagcaattagaaataaagcttgtaatagtagtatgtattatgttcnnnnnnnaataagtatatactatagtttatggatgn |
508 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |
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| T |
34419335 |
tttttatgtcatgattattcagcaattagaaataaagcttgtaatagtagtatgtattatgttctttttttaataagtatatattatagtttatggatga |
34419434 |
T |
|
| Q |
509 |
nnnnnnnnnnnnnnnnnnnnnnnngagactttcatggaacaagacaaatgtatttgtgacgtaaattgattgatattggttctcatacataattaaaaac |
608 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34419435 |
aaataataaaaagtaaaaataaatgagactttcatggaacaagacaaatgtatttgtgacgtaaattgattgatattggttctcatacataattaaaaac |
34419534 |
T |
|
| Q |
609 |
atgtagcaaattgcttaggatatatattttgctaacgtttcaatgagtggttgttattctcctaatttgttgcagagtgagtgttatctacactctcttt |
708 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||| |||||| |||||||||||||||||||||| |
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| T |
34419535 |
atgtagcaaattgcttaggatatatattttactaacgttttaatatgtggttgttattctcctaatttaaggcagagcgagtgttatctacactctcttt |
34419634 |
T |
|
| Q |
709 |
agaacactttctct |
722 |
Q |
| |
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|||||||||||||| |
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| T |
34419635 |
agaacactttctct |
34419648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 15 - 385
Target Start/End: Original strand, 34431190 - 34431560
Alignment:
| Q |
15 |
aagggaaggacaaggattatgtataggatggaagggatggaggaaacaatgtagagtgtgcgccatgtttggaaggtgtaggcaatgccagagagaattg |
114 |
Q |
| |
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|||||||||| || |||||||| |||| ||| |||||||||| | || ||||||| ||||||||||||||| |||||||||| ||||||||||||| |
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| T |
34431190 |
aagggaaggaggagaattatgtagaggagggaggggatggaggcggcgatatagagtgcacgccatgtttggaagatgtaggcaataccagagagaattg |
34431289 |
T |
|
| Q |
115 |
ctatgccactcgagaagaagtagaaggtggacattcctgccatgccacgttttgatgggccaatgggctcggtggcaaggacgaaggcgcaaaggccaac |
214 |
Q |
| |
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| T |
34431290 |
caatgcctccggagaagaagtagaaagtggacattcctgccatgccacgttttgaatggccaataggttcagtagcgaggacgaaggcgcaaaggccaac |
34431389 |
T |
|
| Q |
215 |
accgccagtgctgaaaccggtgaggaggcggaggaggacatagatccaataattaggagagaatgctgttaagcagccaaatatggtgtttagggcacaa |
314 |
Q |
| |
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||| ||| |||| |||||||||||||||||||||| ||||||| ||||||| ||||| |||||||||||||| |||||||| |||| ||||||| |||| |
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| T |
34431390 |
accaccattgctaaaaccggtgaggaggcggaggaagacataggtccaatagttaggggagaatgctgttaaacagccaaaaatggcatttagggaacaa |
34431489 |
T |
|
| Q |
315 |
acaactatgagagaaccctttcttcctagtgatgaatctgaaaggtgcccaaatactccagctcctgaaat |
385 |
Q |
| |
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|| ||| |||| ||||| ||||||||||| || || ||||||||||| ||||| ||||||||||||||||| |
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|
| T |
34431490 |
accactttgagggaaccttttcttcctagagaagagtctgaaaggtgaccaaacactccagctcctgaaat |
34431560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 126 - 249
Target Start/End: Complemental strand, 31612601 - 31612478
Alignment:
| Q |
126 |
gagaagaagtagaaggtggacattcctgccatgccacgttttgatgggccaatgggctcggtggcaaggacgaaggcgcaaaggccaacaccgccagtgc |
225 |
Q |
| |
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||||||||||||||||| ||||| ||||| ||||| ||| ||||| | |||||| |||||||| ||||||||||| ||||| || || || |||| |
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| T |
31612601 |
gagaagaagtagaaggtagacatgcctgcggcaccacgcattgtggggcctacgggctctgtggcaagtacgaaggcgcagaggccgacgccacctgtgc |
31612502 |
T |
|
| Q |
226 |
tgaaaccggtgaggaggcggagga |
249 |
Q |
| |
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||||||| ||||||| |||||||| |
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|
| T |
31612501 |
tgaaaccagtgaggaagcggagga |
31612478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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