View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0899_low_10 (Length: 381)
Name: NF0899_low_10
Description: NF0899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0899_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 131 - 366
Target Start/End: Original strand, 34870582 - 34870817
Alignment:
| Q |
131 |
tccatcaaatttcaccaatttcttcaccaaaatcgacatgcaagtataagaggaagtcatgtaaagggatcatgtcatgtgctatgcatccctcacattg |
230 |
Q |
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| T |
34870582 |
tccatcaaatttcaccaatttcttcaccaaactccacatgcaagtataagaggaagtcatgtaaagggatcatgtcatgtgctatgcatccctcacattg |
34870681 |
T |
|
| Q |
231 |
gatacaacattgatgtcgacacacaaacactgataataatttaagaaaatagtaatgattctacacaaccacgtgtgtcaggattctatgctcattaatt |
330 |
Q |
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| T |
34870682 |
gatacgacattgatgtcgacacacaaacactgataataatttgagaaaatagtagtgattctacacaaccacgtgtgtcaggattttatgctcattaatt |
34870781 |
T |
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| Q |
331 |
tttagattggggttattctcgtgatgattgtctatc |
366 |
Q |
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||| |||||||||||||||||||||||||||||||| |
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| T |
34870782 |
tttggattggggttattctcgtgatgattgtctatc |
34870817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 34870452 - 34870530
Alignment:
| Q |
1 |
ggattatatatttagttatttatcagcattttctccattttagtgggtttattctctccctaaaaatccaaaacgtgaa |
79 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
34870452 |
ggattatatatttagttatttatcagcattttctccattttagtgggtttattctctctctaaaaatccaaaacgtgaa |
34870530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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