View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0899_low_11 (Length: 380)
Name: NF0899_low_11
Description: NF0899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0899_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 78 - 260
Target Start/End: Complemental strand, 34870335 - 34870157
Alignment:
| Q |
78 |
tagatcatacaattattgtagttttgttttatctatttagcttaactcgtttgaatttgaatgttactacataagttattgagttagttgttgataaata |
177 |
Q |
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| T |
34870335 |
tagatcatgcaattattgtagttttgttttatctatttagcttaactcgtttgaatttgaatgttaatacataagttattgagtt----gttgataaata |
34870240 |
T |
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| Q |
178 |
gactaataatagaaagttaaaaaattgtacctttgtccagttggcctcactatgtcaagataacataacatatacactcttct |
260 |
Q |
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| T |
34870239 |
gactaataatagaaagtttaaaaattgtacctttgtccagttggcctcactatgtcaagataacataacatatacactcttct |
34870157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 34870476 - 34870385
Alignment:
| Q |
1 |
tgataaataactaaatatataatccaaaaaga-------gtcaacaatttaaatccactaattacgaaatgatgaaaatgcccctagatcat |
85 |
Q |
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|||||||||||||||||||||||||||||| | || ||||||||||| |||||||||||||||||||||||||||||||| ||||| |
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| T |
34870476 |
tgataaataactaaatatataatccaaaaacaatgaggtgttaacaatttaaacccactaattacgaaatgatgaaaatgcccctaaatcat |
34870385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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