View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0899_low_2 (Length: 621)

Name: NF0899_low_2
Description: NF0899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0899_low_2
NF0899_low_2
[»] chr1 (2 HSPs)
chr1 (24-540)||(1976353-1976869)
chr1 (24-540)||(1983719-1984235)
[»] chr5 (1 HSPs)
chr5 (24-540)||(20956080-20956602)
[»] chr2 (4 HSPs)
chr2 (24-540)||(27161586-27162108)
chr2 (143-459)||(22910498-22910820)
chr2 (28-238)||(23720136-23720352)
chr2 (28-86)||(22910449-22910507)
[»] scaffold0313 (2 HSPs)
scaffold0313 (24-529)||(3633-4144)
scaffold0313 (24-529)||(17790-18301)
[»] scaffold0764 (1 HSPs)
scaffold0764 (24-529)||(2468-2982)
[»] scaffold1531 (1 HSPs)
scaffold1531 (240-540)||(1387-1685)
[»] scaffold0059 (2 HSPs)
scaffold0059 (306-459)||(42511-42664)
scaffold0059 (109-166)||(42347-42404)


Alignment Details
Target: chr1 (Bit Score: 429; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 24 - 540
Target Start/End: Original strand, 1976353 - 1976869
Alignment:
Q  24 tcatcagagggaagtgatcctgatgcttgaggaataggatcagctgacatctcattctcttgaggcaagctaggttcagcagatgcatttgtctgaacat 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1976353 tcatcagagggaagtgatcctgatgcttgaggaataggatcagctgacatctcattctcttgaggcaagctaggttcagcagatgcatttgtctgaacat 1976452  T
Q  124 tcagaactgtgattgcaggattttcttgaagttcctgaatcatttcatgagcttgcacttcctcattgttttcaggctgtgcatcttggtacacattcaa 223  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||    
T  1976453 tctgaactgtgattgcaggattttcttgaagttcctgaatcatttcatgagcttgcacttcctcattgttttcaggttgtgcatcttggtacacatgcaa 1976552  T
Q  224 atctgtgcttggatcttccacatttagatcaaagccagtttgattttcagcttgctcaaaaccttgaggatccatttcatcatgtccctcactcattctt 323  Q
    ||||||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||  ||||||||||||||||||| ||||||||||||||||||    
T  1976553 atctgtgctaggatcttccatatttagatcaaagccagtttgattatcagcttgctcaaactcttgaggatccatttcatcgtgtccctcactcattctt 1976652  T
Q  324 tgagagacaagaatttcagccacatcctgcatgtcttgatcattttcctgagattcttcttccacagcataagcaacttcttgagcagtttgctcagctt 423  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| | ||||| ||||||||||||||||||||||||||||||  |    
T  1976653 tgagagacaaggatttcagccacatcctgcatgtcttgatcattttcctgagatccttataccacaacataagcaacttcttgagcagtttgctcagtat 1976752  T
Q  424 tttcttcaacttcattaactttctgaagttgttcagtagaaggagtatcaacattctgaacatcagcaacatcagttgagttaacattatgaagttcctc 523  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| || ||||||||| |||||| |||||||||||    
T  1976753 tttcttcaacttcattaactttctgaagttgttcagtaggaggagtatcaacattctgaacttcagcagcagcagttgagtcaacattctgaagttcctc 1976852  T
Q  524 ttcagaaattgcagcaa 540  Q
    |||||||||||||||||    
T  1976853 ttcagaaattgcagcaa 1976869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 24 - 540
Target Start/End: Original strand, 1983719 - 1984235
Alignment:
Q  24 tcatcagagggaagtgatcctgatgcttgaggaataggatcagctgacatctcattctcttgaggcaagctaggttcagcagatgcatttgtctgaacat 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1983719 tcatcagagggaagtgatcctgatgcttgaggaataggatcagctgacatctcattctcttgaggcaagctaggttcagcagatgcatttgtctgaacat 1983818  T
Q  124 tcagaactgtgattgcaggattttcttgaagttcctgaatcatttcatgagcttgcacttcctcattgttttcaggctgtgcatcttggtacacattcaa 223  Q
    || ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||    
T  1983819 tctgaactatgattgcaggaatttcttgaagttcctgaatcatttcatgagcttgcacttcctcattgttttcaggttgtgcatcttggtacacatgcaa 1983918  T
Q  224 atctgtgcttggatcttccacatttagatcaaagccagtttgattttcagcttgctcaaaaccttgaggatccatttcatcatgtccctcactcattctt 323  Q
    ||||||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||  ||||||||||||||||||| ||||||||||||||||||    
T  1983919 atctgtgctaggatcttccatatttagatcaaagccagtttgattatcagcttgctcaaactcttgaggatccatttcatcgtgtccctcactcattctt 1984018  T
Q  324 tgagagacaagaatttcagccacatcctgcatgtcttgatcattttcctgagattcttcttccacagcataagcaacttcttgagcagtttgctcagctt 423  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| | ||||| ||||||||||||||||||||||| ||||||  |    
T  1984019 tgagagacaaggatttcagccacatcctgcatgtcttgatcattttcctgagatccttttgccacatcataagcaacttcttgagcagttggctcagtat 1984118  T
Q  424 tttcttcaacttcattaactttctgaagttgttcagtagaaggagtatcaacattctgaacatcagcaacatcagttgagttaacattatgaagttcctc 523  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||  ||||||||||| |||||| |||||||||||    
T  1984119 tttcttcaacttcattaactttctgaagttgttcagtaggaggagtatcaacattctgaacttcagcagtatcagttgagtcaacattctgaagttcctc 1984218  T
Q  524 ttcagaaattgcagcaa 540  Q
    |||||||||||||||||    
T  1984219 ttcagaaattgcagcaa 1984235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 24 - 540
Target Start/End: Complemental strand, 20956602 - 20956080
Alignment:
Q  24 tcatcagagggaagtgatcctgatgcttgaggaataggatcagctgacatctcattctcttgaggcaagctaggttcagcagatgcatttgtctgaacat 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20956602 tcatcagagggaagtgatcctgatgcttgaggaataggatcagctgacatctcattctcttgaggcaagctaggttcagcagatgcatttgtctgaacat 20956503  T
Q  124 tcagaactgtgattgcaggattttcttgaagttcctgaatcatttcatgagctt------gcacttcctcattgttttcaggctgtgcatcttggtacac 217  Q
    || ||||||||||||||||||||||||||||||||||||||||||| |||||||      ||||||||||||||||||||||||||||||||||||||||    
T  20956502 tctgaactgtgattgcaggattttcttgaagttcctgaatcatttcgtgagcttcctgaagcacttcctcattgttttcaggctgtgcatcttggtacac 20956403  T
Q  218 attcaaatctgtgcttggatcttccacatttagatcaaagccagtttgattttcagcttgctcaaaaccttgaggatccatttcatcatgtccctcactc 317  Q
    ||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  20956402 attcacatctgagcttggatcttccacatttagatcaaggccagtttgattttcagcttgctcaaaaccttgaggctccatttcatcatgtccatcactc 20956303  T
Q  318 attctttgagagacaagaatttcagccacatcctgcatgtcttgatcattttcctgagattcttcttccacagcataagcaacttcttgagcagtttgct 417  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  20956302 attctttgagagacaagaatttcagccacatcttgcatgtcttgatcattttcctgagatccttcttccacagcataagcaacttcttgagcagtttgct 20956203  T
Q  418 cagctttttcttcaacttcattaactttctgaagttgttcagtagaaggagtatcaacattctgaacatcagcaacatcagttgagttaacattatgaag 517  Q
    |||  |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| || || ||||||||| |||||| |||||    
T  20956202 cagtattttcttcaacttcattaactttctgaagttgttcagtaggaggagtatcaacattctgaacttcaacagcaacagttgagtcaacattctgaag 20956103  T
Q  518 ttcctcttcagaaattgcagcaa 540  Q
    |||||||||||| ||||||||||    
T  20956102 ttcctcttcagagattgcagcaa 20956080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 424; Significance: 0; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 24 - 540
Target Start/End: Original strand, 27161586 - 27162108
Alignment:
Q  24 tcatcagagggaagtgatcctgatgcttgaggaataggatcagctgacatctcattctcttgaggcaagctaggttcagcagatgcatttgtctgaacat 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27161586 tcatcagagggaagtgatcctgatgcttgaggaataggatcagctgacatctcattctcttgaggcaagctaggttcagcagatgcatttgtctgaacat 27161685  T
Q  124 tcagaactgtgattgcaggattttcttgaagttcctgaatcatttcatgagctt------gcacttcctcattgttttcaggctgtgcatcttggtacac 217  Q
    || ||||||||||||||||||||||||||||||||||||||||||| |||||||      ||||||||||||||||||||||||||||||||||||||||    
T  27161686 tctgaactgtgattgcaggattttcttgaagttcctgaatcatttcgtgagcttcctgaagcacttcctcattgttttcaggctgtgcatcttggtacac 27161785  T
Q  218 attcaaatctgtgcttggatcttccacatttagatcaaagccagtttgattttcagcttgctcaaaaccttgaggatccatttcatcatgtccctcactc 317  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||| ||||||    
T  27161786 attcacatctgagcttggatcttccacatttagatcaaagccagtttgattttcagcttgctcaaactcttgaggctccatttcatcatgtccatcactc 27161885  T
Q  318 attctttgagagacaagaatttcagccacatcctgcatgtcttgatcattttcctgagattcttcttccacagcataagcaacttcttgagcagtttgct 417  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  27161886 attctttgagagacaagaatttcagccacatcttgcatgtcttgatcattttcctgagatccttcttccacagcataagcaacttcttgagcagtttgct 27161985  T
Q  418 cagctttttcttcaacttcattaactttctgaagttgttcagtagaaggagtatcaacattctgaacatcagcaacatcagttgagttaacattatgaag 517  Q
    |||  |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| || ||||||||| |||||| |||||    
T  27161986 cagtattttcttcaacttcattaactttctgaagttgttcagtaggaggagtatcaacattctgaacttcagcagcagcagttgagtcaacattctgaag 27162085  T
Q  518 ttcctcttcagaaattgcagcaa 540  Q
    |||||||||||| ||||||||||    
T  27162086 ttcctcttcagagattgcagcaa 27162108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 143 - 459
Target Start/End: Original strand, 22910498 - 22910820
Alignment:
Q  143 attttcttgaagttcctgaatcatttcatgagcttgc------acttcctcattgttttcaggctgtgcatcttggtacacattcaaatctgtgcttgga 236  Q
    |||||||||||||||||||||||||| |||||||| |      |||||||||||||||||||| ||||||||||||||||||||||||| || |||||||    
T  22910498 attttcttgaagttcctgaatcatttaatgagcttcctgaaacacttcctcattgttttcaggttgtgcatcttggtacacattcaaatatgagcttgga 22910597  T
Q  237 tcttccacatttagatcaaagccagtttgattttcagcttgctcaaaaccttgaggatccatttcatcatgtccctcactcattctttgagagacaagaa 336  Q
    || |||||||||||||||||||||||||| ||||||||||||||||   |||||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  22910598 tcctccacatttagatcaaagccagtttggttttcagcttgctcaatttcttgagaatccatttcatcatgtccctcactcatcctttgagagacaagaa 22910697  T
Q  337 tttcagccacatcctgcatgtcttgatcattttcctgagattcttcttccacagcataagca-acttcttgagcagtttgctcagctttttcttcaactt 435  Q
    ||||||| ||||| |||||||||||||||| |||||||||| |||||||  |||||| | || | |||||  || | || |||||| |||||||||||||    
T  22910698 tttcagcaacatcatgcatgtcttgatcatcttcctgagatccttcttcagcagcatcaacatatttctt-tgctgctttctcagcattttcttcaactt 22910796  T
Q  436 cattaactttctgaagttgttcag 459  Q
    ||| ||||||||||||||||||||    
T  22910797 catcaactttctgaagttgttcag 22910820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 28 - 238
Target Start/End: Complemental strand, 23720352 - 23720136
Alignment:
Q  28 cagagggaagtgatcctgatgcttgaggaataggatcagctgacatctcattctcttgaggcaagctaggttcagcagatgcatttgtctgaacattcag 127  Q
    ||||||| || |||||||||||||||||||| || ||| ||||||| |||||||| |||||||||||||||||||||| ||||||| ||||| ||||  |    
T  23720352 cagagggcagagatcctgatgcttgaggaatggggtcaactgacatttcattctcctgaggcaagctaggttcagcagttgcatttttctgagcattatg 23720253  T
Q  128 aactgtgattgcaggattttcttgaagttcctgaatcatttcatgagctt------gcacttcctcattgttttcaggctgtgcatcttggtacacattc 221  Q
    |||| |||||||||||||||||||||||| ||||||||||||| || |||      |||| ||||||||||||||||||||||||||||||||||||||     
T  23720252 aactatgattgcaggattttcttgaagtttctgaatcatttcacgatcttcctgaagcacatcctcattgttttcaggctgtgcatcttggtacacattt 23720153  T
Q  222 aaatctgtgcttggatc 238  Q
    ||||||| |||||||||    
T  23720152 aaatctgagcttggatc 23720136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 28 - 86
Target Start/End: Original strand, 22910449 - 22910507
Alignment:
Q  28 cagagggaagtgatcctgatgcttgaggaataggatcagctgacatctcattctcttga 86  Q
    ||||||| || |||||||||||||||||||| || ||| ||||||| ||||| ||||||    
T  22910449 cagagggcagagatcctgatgcttgaggaatggggtcaactgacatttcattttcttga 22910507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0313 (Bit Score: 385; Significance: 0; HSPs: 2)
Name: scaffold0313
Description:

Target: scaffold0313; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 24 - 529
Target Start/End: Complemental strand, 4144 - 3633
Alignment:
Q  24 tcatcagagggaagtgatcctgatgcttgaggaataggatcagctgacatctcattctcttgaggcaagctaggttcagcagatgcatttgtctgaacat 123  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4144 tcatcagagggaagtgatcctgatgcttgaggaataggatcaactgacatctcattctcttgaggcaagctaggttcagcagatgcatttgtctgaacat 4045  T
Q  124 tcagaactgtgattgcaggattttcttgaagttcctgaatcatttcatgagctt------gcacttcctcattgttttcaggctgtgcatcttggtacac 217  Q
    || ||||||||||||||||||||||||||||||||||||||||||| |||||||      ||||||||||||||||||||||||||||||||||||||||    
T  4044 tctgaactgtgattgcaggattttcttgaagttcctgaatcatttcgtgagcttcctgaagcacttcctcattgttttcaggctgtgcatcttggtacac 3945  T
Q  218 attcaaatctgtgcttggatcttccacatttagatcaaagccagtttgattttcagcttgctcaaaaccttgaggatccatttcatcatgtccctcactc 317  Q
    ||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||| ||||||    
T  3944 attcacatctgagcttggatcttccacatttagattaaagccagtttgattttcagcttgctcaaactcttgaggctccatttcatcatgtccatcactc 3845  T
Q  318 attctttgagagacaagaatttcagccacatcctgcatgtcttgatcattttcctgagattcttcttccacagcataagcaacttcttgagcagtttgct 417  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  3844 attctttgagagacaagaatttcagccacatcttgcatgtcttgatcattttcctgagatccttcttccacagcataagcaacttcttgagcagtttgct 3745  T
Q  418 cagctttttcttcaacttcattaactttctgaagttgttcagtagaaggagtatcaacattctgaacatcagcaacatcagttgagttaacattatgaag 517  Q
    |||  |||||||||||||||||||||||||||||||| |||| ||  |||  ||||||||||||||||||||||||| ||||||||| ||| || |||||    
T  3744 cagtattttcttcaacttcattaactttctgaagttggtcagcaggtggaacatcaacattctgaacatcagcaacaccagttgagtcaactttctgaag 3645  T
Q  518 ttcctcttcaga 529  Q
     |||| ||||||    
T  3644 gtccttttcaga 3633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0313; HSP #2
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 24 - 529
Target Start/End: Complemental strand, 18301 - 17790
Alignment:
Q  24 tcatcagagggaagtgatcctgatgcttgaggaataggatcagctgacatctcattctcttgaggcaagctaggttcagcagatgcatttgtctgaacat 123  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18301 tcatcagagggaagtgatcctgatgcttgaggaataggatcaactgacatctcattctcttgaggcaagctaggttcagcagatgcatttgtctgaacat 18202  T
Q  124 tcagaactgtgattgcaggattttcttgaagttcctgaatcatttcatgagctt------gcacttcctcattgttttcaggctgtgcatcttggtacac 217  Q
    || ||||||||||||||||||||||||||||||||||||||||||| |||||||      ||||||||||||||||||||||||||||||||||||||||    
T  18201 tctgaactgtgattgcaggattttcttgaagttcctgaatcatttcgtgagcttcctgaagcacttcctcattgttttcaggctgtgcatcttggtacac 18102  T
Q  218 attcaaatctgtgcttggatcttccacatttagatcaaagccagtttgattttcagcttgctcaaaaccttgaggatccatttcatcatgtccctcactc 317  Q
    ||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||| ||||||    
T  18101 attcacatctgagcttggatcttccacatttagattaaagccagtttgattttcagcttgctcaaactcttgaggctccatttcatcatgtccatcactc 18002  T
Q  318 attctttgagagacaagaatttcagccacatcctgcatgtcttgatcattttcctgagattcttcttccacagcataagcaacttcttgagcagtttgct 417  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  18001 attctttgagagacaagaatttcagccacatcttgcatgtcttgatcattttcctgagatccttcttccacagcataagcaacttcttgagcagtttgct 17902  T
Q  418 cagctttttcttcaacttcattaactttctgaagttgttcagtagaaggagtatcaacattctgaacatcagcaacatcagttgagttaacattatgaag 517  Q
    |||  |||||||||||||||||||||||||||||||| |||| ||  |||  ||||||||||||||||||||||||| ||||||||| ||| || |||||    
T  17901 cagtattttcttcaacttcattaactttctgaagttggtcagcaggtggaacatcaacattctgaacatcagcaacaccagttgagtcaactttctgaag 17802  T
Q  518 ttcctcttcaga 529  Q
     |||| ||||||    
T  17801 gtccttttcaga 17790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0764 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: scaffold0764
Description:

Target: scaffold0764; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 24 - 529
Target Start/End: Original strand, 2468 - 2982
Alignment:
Q  24 tcatcagagggaagtgatcctgatgcttgaggaataggatcagctgacatctcattctcttgaggcaagctaggttcagcagatgcatttgtctgaacat 123  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2468 tcatcagagggaagtgatcctgatgcttgaggaataggatcaactgacatctcattctcttgaggcaagctaggttcagcagatgcatttgtctgaacat 2567  T
Q  124 tcagaactgtgattgcaggattttcttgaagttcctgaatcatttcatgagctt------gcacttcctcattgttttcaggctgtgcatcttggtacac 217  Q
    || ||||||||||||||||||||||||||||||||||||||||||| |||||||      ||||||||||||||||||||||||||||||||||||||||    
T  2568 tctgaactgtgattgcaggattttcttgaagttcctgaatcatttcgtgagcttcctgaagcacttcctcattgttttcaggctgtgcatcttggtacac 2667  T
Q  218 attcaaatctgtgcttggatcttccacatttagatcaaagccagtttga--ttttcagcttgctcaaaaccttgaggatccatttcatcatgtccctcac 315  Q
    ||||| ||||| ||||||||||||||||||||||| ||||||||||||   |||||||||||||||||  ||||||| ||||||||||||||||| ||||    
T  2668 attcacatctgagcttggatcttccacatttagattaaagccagtttgtatttttcagcttgctcaaactcttgaggctccatttcatcatgtccatcac 2767  T
Q  316 tcattcttt-gagagacaagaatttcagccacatcctgcatgtcttgatcattttcctgagattcttcttccacagcataagcaacttcttgagcagttt 414  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  2768 tcattcttttgagagacaagaatttcagccacatcttgcatgtcttgatcattttcctgagatccttcttccacagcataagcaacttcttgagcagttt 2867  T
Q  415 gctcagctttttcttcaacttcattaactttctgaagttgttcagtagaaggagtatcaacattctgaacatcagcaacatcagttgagttaacattatg 514  Q
    ||||||  |||||||||||||||||||||||||||||||| |||| ||  |||  ||||||||||||||||||||||||| ||||||||| ||| || ||    
T  2868 gctcagtattttcttcaacttcattaactttctgaagttggtcagcaggtggaacatcaacattctgaacatcagcaacaccagttgagtcaactttctg 2967  T
Q  515 aagttcctcttcaga 529  Q
    ||| |||| ||||||    
T  2968 aaggtccttttcaga 2982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1531 (Bit Score: 122; Significance: 3e-62; HSPs: 1)
Name: scaffold1531
Description:

Target: scaffold1531; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 240 - 540
Target Start/End: Complemental strand, 1685 - 1387
Alignment:
Q  240 tccacatttagatcaaagccagtttgattttcagcttgctcaaaaccttgaggatccatttcatcatgtccctcactcattctttgagagacaagaattt 339  Q
    ||||||||||||||||||||||||||||| |||||||||||||   |||||| ||||||||||||||||||||||||||| |||||||||||||| ||||    
T  1685 tccacatttagatcaaagccagtttgattatcagcttgctcaatttcttgagaatccatttcatcatgtccctcactcatcctttgagagacaaggattt 1586  T
Q  340 cagccacatcctgcatgtcttgatcattttcctgagattcttcttccacagcataagcaacttcttgagcagtttgctcagctttttcttcaacttcatt 439  Q
    |||||||||| ||||||||||| ||||||||||||||| ||||||| ||   || |  |||||||||||  |||| ||||   ||| ||||||||||||     
T  1585 cagccacatcatgcatgtcttggtcattttcctgagatgcttcttcaac--tatcaataacttcttgagttgttttctcattatttccttcaacttcatc 1488  T
Q  440 aactttctgaagttgttcagtagaaggagtatcaacattctgaacatcagcaacatcagttgagttaacattatgaagttcctcttcagaaattgcagca 539  Q
    ||||||||||||||||| || ||  | |  | |||| |||||| |||||||| ||  |||||||| ||| || | ||||||| |||||||||||| ||||    
T  1487 aactttctgaagttgtttagcaggtgaaacaacaacgttctgatcatcagcagcactagttgagtcaactttctaaagttccacttcagaaattgaagca 1388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 50; Significance: 3e-19; HSPs: 2)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 306 - 459
Target Start/End: Original strand, 42511 - 42664
Alignment:
Q  306 tgtccctcactcattctttgagagacaagaatttcagccacatcctgcatgtcttgatcattttcctgagattcttcttccacagcataagcaacttctt 405  Q
    ||||| ||||||||| ||| ||| || || |||||||||||||| |||||||| ||||||| || ||||||||| | ||| ||| ||| | |||| |  |    
T  42511 tgtccttcactcattatttaagaaaccaggatttcagccacatcatgcatgtcctgatcatctttctgagattccttttcaacaacatcaacaacgttct 42610  T
Q  406 gagcagtttgctcagctttttcttcaacttcattaactttctgaagttgttcag 459  Q
    || | |||| |||||  |||||||||||||||  ||||||||||||||||||||    
T  42611 gaactgttttctcagtattttcttcaacttcaacaactttctgaagttgttcag 42664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 109 - 166
Target Start/End: Original strand, 42347 - 42404
Alignment:
Q  109 catttgtctgaacattcagaactgtgattgcaggattttcttgaagttcctgaatcat 166  Q
    ||||||| ||||||||| ||||| ||||| |||||||||||||||  |||||||||||    
T  42347 catttgtttgaacattctgaactatgatttcaggattttcttgaatatcctgaatcat 42404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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