View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0899_low_20 (Length: 312)
Name: NF0899_low_20
Description: NF0899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0899_low_20 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 6 - 284
Target Start/End: Complemental strand, 32846132 - 32845854
Alignment:
| Q |
6 |
ctccaagaatatgttaaactaatttagaacaaagtctgaatgaaatcaatggtaaaaataaaggtgttacagtgcaaatatttcttaatttcaaatgaac |
105 |
Q |
| |
|
|||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32846132 |
ctccaaaaacatgttaaactaatttagaacaaagtctgagtgaaatcaatggtaaaaataaaggtgttacagtgcaaatatttcttaatttcaaatgaac |
32846033 |
T |
|
| Q |
106 |
ttaaaaaagaacacaacttacaactgcaacctccagatcttccaccaccatccctttcaggtaaccactgattaatcagggtttttgatttgagattttg |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
32846032 |
ttaaaaaagaacacaacttacaactgcaacctccagatctgccaccaccatccctttcaggtaaccactgattaattagggtttttgatttgagattttg |
32845933 |
T |
|
| Q |
206 |
agtatgaagtttctcaactcactgtatggtttttgatttggggaacatacaaaagagattaacagattatttcatctgt |
284 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
32845932 |
agtatgaagtttctcaactcactgtatggtttttgatttggggaacatacaaaaaagattaacagattatttcatctgt |
32845854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 227 times since January 2019
Visitors: 6714