View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0899_low_21 (Length: 293)

Name: NF0899_low_21
Description: NF0899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0899_low_21
NF0899_low_21
[»] chr5 (2 HSPs)
chr5 (62-252)||(23944425-23944615)
chr5 (174-247)||(7813346-7813419)
[»] chr3 (7 HSPs)
chr3 (62-252)||(17718908-17719098)
chr3 (62-252)||(19020137-19020327)
chr3 (62-252)||(53608850-53609040)
chr3 (159-252)||(38647732-38647825)
chr3 (160-252)||(55025352-55025444)
chr3 (161-247)||(11896657-11896743)
chr3 (159-244)||(26433253-26433338)
[»] chr1 (6 HSPs)
chr1 (161-252)||(1524476-1524567)
chr1 (159-247)||(20284356-20284444)
chr1 (159-252)||(31325502-31325593)
chr1 (162-252)||(43297868-43297958)
chr1 (99-252)||(5193604-5193757)
chr1 (123-244)||(50451366-50451487)
[»] chr8 (4 HSPs)
chr8 (159-247)||(23133137-23133225)
chr8 (174-252)||(26972974-26973052)
chr8 (150-252)||(38347967-38348067)
chr8 (147-252)||(26709260-26709365)
[»] chr6 (2 HSPs)
chr6 (136-252)||(35232970-35233086)
chr6 (161-250)||(12646651-12646740)
[»] chr2 (6 HSPs)
chr2 (159-247)||(14654232-14654320)
chr2 (161-252)||(572698-572789)
chr2 (149-252)||(35135769-35135872)
chr2 (150-252)||(19264911-19265013)
chr2 (159-247)||(16321953-16322041)
chr2 (195-250)||(177033-177088)
[»] chr4 (5 HSPs)
chr4 (162-247)||(46785030-46785115)
chr4 (174-241)||(14307303-14307370)
chr4 (195-241)||(14291275-14291321)
chr4 (162-252)||(43922642-43922732)
chr4 (162-244)||(48846453-48846535)
[»] scaffold0214 (1 HSPs)
scaffold0214 (172-252)||(8484-8564)
[»] chr7 (3 HSPs)
chr7 (172-250)||(23208421-23208499)
chr7 (159-252)||(16770514-16770607)
chr7 (172-252)||(1579712-1579792)


Alignment Details
Target: chr5 (Bit Score: 171; Significance: 7e-92; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 62 - 252
Target Start/End: Original strand, 23944425 - 23944615
Alignment:
Q  62 tcatcataaccgaactttcattaccaaccaccaaccaaccattgatgacaccgacaagctttccctcactaaagctattactaagagtgaagtattcgct 161  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  23944425 tcatcataaccgaactttcattaccaaccaccaaccaaccattgatgacaccgacaagctttccctcacaaaacctattactaagagtgaagtattcgct 23944524  T
Q  162 gcccttaacaccatgaaacccttcaaagcccccggcccagatggttttcaatgtatcttcttcaagcaatactggcatattgttggagatg 252  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||    
T  23944525 gcccttaacaccatgaaacccttcaaagcccctggcccagatggttttcaatgtatcttcttcaagcaatactgacacattgttggagatg 23944615  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 7813346 - 7813419
Alignment:
Q  174 atgaaacccttcaaagcccccggcccagatggttttcaatgtatcttcttcaagcaatactggcatattgttgg 247  Q
    |||||||| | ||||||||| || || || ||||| || |||||||||||||| || |||||||||||||||||    
T  7813346 atgaaaccttacaaagccccaggacctgacggtttccattgtatcttcttcaaacagtactggcatattgttgg 7813419  T

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Target: chr3 (Bit Score: 91; Significance: 4e-44; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 62 - 252
Target Start/End: Complemental strand, 17719098 - 17718908
Alignment:
Q  62 tcatcataaccgaactttcattaccaaccaccaaccaaccattgatgacaccgacaagctttccctcactaaagctattactaagagtgaagtattcgct 161  Q
    |||||||||||| || ||| ||| | || |||||||||||||||| |||  |||||| ||||||||||| ||| ||||||||||||||||||| |||||     
T  17719098 tcatcataaccgcacgttccttaacgacaaccaaccaaccattgacgacctcgacaaactttccctcaccaaacctattactaagagtgaagtcttcgcg 17718999  T
Q  162 gcccttaacaccatgaaacccttcaaagcccccggcccagatggttttcaatgtatcttcttcaagcaatactggcatattgttggagatg 252  Q
    ||  ||||||||||||| || | |||||||||||| ||||||||||||||||||||||| ||||| || |||||||| || ||||||||||    
T  17718998 gcatttaacaccatgaagccgtacaaagcccccggtccagatggttttcaatgtatctttttcaaacagtactggcacatagttggagatg 17718908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 62 - 252
Target Start/End: Complemental strand, 19020327 - 19020137
Alignment:
Q  62 tcatcataaccgaactttcattaccaaccaccaaccaaccattgatgacaccgacaagctttccctcactaaagctattactaagagtgaagtattcgct 161  Q
    |||||||||||| || ||| ||| | || |||||||||||||||| |||  |||||| ||||||||||| ||| ||||||||||||||||||| |||||     
T  19020327 tcatcataaccgcacgttccttaacgacaaccaaccaaccattgacgacctcgacaaactttccctcaccaaacctattactaagagtgaagtcttcgcg 19020228  T
Q  162 gcccttaacaccatgaaacccttcaaagcccccggcccagatggttttcaatgtatcttcttcaagcaatactggcatattgttggagatg 252  Q
    ||  ||||||||||||| || | |||||||||||| ||||||||||||||||||||||| ||||| || |||||||| || ||||||||||    
T  19020227 gcatttaacaccatgaagccgtacaaagcccccggtccagatggttttcaatgtatctttttcaaacagtactggcacatagttggagatg 19020137  T

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Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 62 - 252
Target Start/End: Complemental strand, 53609040 - 53608850
Alignment:
Q  62 tcatcataaccgaactttcattaccaaccaccaaccaaccattgatgacaccgacaagctttccctcactaaagctattactaagagtgaagtattcgct 161  Q
    |||||| |||||| ||||| ||||| | ||||| ||||| ||||| |||  ||  |||||||| ||||| ||| ||||||| ||||| || || ||||||    
T  53609040 tcatcacaaccgagctttctttaccgatcaccagccaacaattgacgacctcggaaagctttcactcaccaaacctattaccaagagcgaggttttcgct 53608941  T
Q  162 gcccttaacaccatgaaacccttcaaagcccccggcccagatggttttcaatgtatcttcttcaagcaatactggcatattgttggagatg 252  Q
    ||||| || |||||||| || |  |||||||||||  | |||||||| ||||| ||||||||||| || |||||||| || ||||||||||    
T  53608940 gccctcaataccatgaagccttataaagcccccggtgctgatggtttccaatgcatcttcttcaaacagtactggcacatagttggagatg 53608850  T

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Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 159 - 252
Target Start/End: Complemental strand, 38647825 - 38647732
Alignment:
Q  159 gctgcccttaacaccatgaaacccttcaaagcccccggcccagatggttttcaatgtatcttcttcaagcaatactggcatattgttggagatg 252  Q
    ||||| |||||| |||||||||| | |||||| ||||||||||||||||| || |||||||||||||| ||||| ||||| || || |||||||    
T  38647825 gctgcacttaactccatgaaaccttacaaagcacccggcccagatggtttccattgtatcttcttcaaacaatattggcacatagtcggagatg 38647732  T

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Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 160 - 252
Target Start/End: Complemental strand, 55025444 - 55025352
Alignment:
Q  160 ctgcccttaacaccatgaaacccttcaaagcccccggcccagatggttttcaatgtatcttcttcaagcaatactggcatattgttggagatg 252  Q
    |||||||||||||||||||||| | |||||| || |||||||||||||| ||||| || || ||||| ||||| ||||| ||| |||||||||    
T  55025444 ctgcccttaacaccatgaaaccttacaaagctcctggcccagatggtttccaatgcatatttttcaaacaatattggcacattattggagatg 55025352  T

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Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 161 - 247
Target Start/End: Original strand, 11896657 - 11896743
Alignment:
Q  161 tgcccttaacaccatgaaacccttcaaagcccccggcccagatggttttcaatgtatcttcttcaagcaatactggcatattgttgg 247  Q
    |||||||||| |||||||||||| ||||||||| || || |||||||| || || |||||||||||||| ||||| || ||||||||    
T  11896657 tgcccttaactccatgaaaccctacaaagcccctggtccggatggtttccattgcatcttcttcaagcagtactgacacattgttgg 11896743  T

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Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 159 - 244
Target Start/End: Complemental strand, 26433338 - 26433253
Alignment:
Q  159 gctgcccttaacaccatgaaacccttcaaagcccccggcccagatggttttcaatgtatcttcttcaagcaatactggcatattgt 244  Q
    |||||||||||| ||||||| || | ||||||||| || || |||||||| || || ||||||||||| || ||||||||||||||    
T  26433338 gctgcccttaactccatgaagccttacaaagcccctggtcctgatggtttccattgcatcttcttcaaacagtactggcatattgt 26433253  T

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Target: chr1 (Bit Score: 52; Significance: 7e-21; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 161 - 252
Target Start/End: Original strand, 1524476 - 1524567
Alignment:
Q  161 tgcccttaacaccatgaaacccttcaaagcccccggcccagatggttttcaatgtatcttcttcaagcaatactggcatattgttggagatg 252  Q
    |||||||||| |||| ||||| | |||||| |||| ||| |||||||||||||| |||||||||||| ||||||||||||| ||||||||||    
T  1524476 tgcccttaactccataaaaccttacaaagcacccgaccctgatggttttcaatgcatcttcttcaagaaatactggcatatagttggagatg 1524567  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 159 - 247
Target Start/End: Original strand, 20284356 - 20284444
Alignment:
Q  159 gctgcccttaacaccatgaaacccttcaaagcccccggcccagatggttttcaatgtatcttcttcaagcaatactggcatattgttgg 247  Q
    |||||||||||| |||||||||||| ||||||||| || || |||||||| || || |||||||||||||| |||||||| ||||||||    
T  20284356 gctgcccttaactccatgaaaccctacaaagcccctggtccggatggtttccattgcatcttcttcaagcagtactggcacattgttgg 20284444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 159 - 252
Target Start/End: Complemental strand, 31325593 - 31325502
Alignment:
Q  159 gctgcccttaacaccatgaaacccttcaaagcccccggcccagatggttttcaatgtatcttcttcaagcaatactggcatattgttggagatg 252  Q
    |||||||||||| |||||||||| | |||||| || | | |||||||||| || |||||||||||||| ||||| |||||||  ||||||||||    
T  31325593 gctgcccttaactccatgaaaccttacaaagcacctgactcagatggtttccattgtatcttcttcaaacaatattggcata--gttggagatg 31325502  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 162 - 252
Target Start/End: Original strand, 43297868 - 43297958
Alignment:
Q  162 gcccttaacaccatgaaacccttcaaagcccccggcccagatggttttcaatgtatcttcttcaagcaatactggcatattgttggagatg 252  Q
    ||||||||| |||||||||||| |||||| |||| ||| ||||| || || || ||||||||||| ||||| ||||| || ||||||||||    
T  43297868 gcccttaactccatgaaaccctacaaagcacccgaccctgatggcttccattgcatcttcttcaaacaatattggcacatagttggagatg 43297958  T

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Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 99 - 252
Target Start/End: Complemental strand, 5193757 - 5193604
Alignment:
Q  99 accattgatgacaccgacaagctttccctcactaaagctattactaagagtgaagtattcgctgcccttaacaccatgaaacccttcaaagcccccggcc 198  Q
    |||||||||||||  || || |||| |||||||||| |||  || |||| |||||| || |||||||||||  |||||||||| | |||||| |||| ||    
T  5193757 accattgatgacatagaaaaacttttcctcactaaacctaccaccaagaatgaagtgtttgctgcccttaattccatgaaaccatacaaagcacccgacc 5193658  T
Q  199 cagatggttttcaatgtatcttcttcaagcaatactggcatattgttggagatg 252  Q
    | ||||  || || || |||||||| || ||||| ||||| || ||||||||||    
T  5193657 ccgatgacttccattgcatcttctttaaacaatattggcacatagttggagatg 5193604  T

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Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 123 - 244
Target Start/End: Original strand, 50451366 - 50451487
Alignment:
Q  123 tccctcactaaagctattactaagagtgaagtattcgctgcccttaacaccatgaaacccttcaaagcccccggcccagatggttttcaatgtatcttct 222  Q
    ||||||||| || | || |||||||  ||||| || ||||| || ||| |||||||||| |  ||||| |||||||| |||||||| || || |||||||    
T  50451366 tccctcactgaacccatcactaagaacgaagtgtttgctgcactaaactccatgaaaccttataaagctcccggcccggatggtttccattgcatcttct 50451465  T
Q  223 tcaagcaatactggcatattgt 244  Q
    |||| || ||||||||||||||    
T  50451466 tcaaacagtactggcatattgt 50451487  T

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Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 159 - 247
Target Start/End: Complemental strand, 23133225 - 23133137
Alignment:
Q  159 gctgcccttaacaccatgaaacccttcaaagcccccggcccagatggttttcaatgtatcttcttcaagcaatactggcatattgttgg 247  Q
    |||||||||||| |||||||||||| ||||||||| || || |||||||| || || |||||||||||||| |||||||| ||||||||    
T  23133225 gctgcccttaactccatgaaaccctacaaagcccctggtccggatggtttccattgcatcttcttcaagcagtactggcacattgttgg 23133137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 174 - 252
Target Start/End: Original strand, 26972974 - 26973052
Alignment:
Q  174 atgaaacccttcaaagcccccggcccagatggttttcaatgtatcttcttcaagcaatactggcatattgttggagatg 252  Q
    ||||| |||| ||||||||| ||||| ||||| ||||| || ||||| || || |||||||||||||| ||||||||||    
T  26972974 atgaagccctacaaagcccctggccccgatggctttcactgcatcttttttaaacaatactggcatatagttggagatg 26973052  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 252
Target Start/End: Original strand, 38347967 - 38348067
Alignment:
Q  150 gaagtattcgctgcccttaacaccatgaaacccttcaaagcccccggcccagatggttttcaatgtatcttcttcaagcaatactggcatattgttggag 249  Q
    ||||| ||| ||||||||||| ||||| |||||| |||||| || | ||  |||||||| || ||||| || ||||||||||||| |||||| |||||||    
T  38347967 gaagtcttcactgcccttaactccatgcaaccctacaaagcgccggaccttgatggtttccattgtat-tttttcaagcaatact-gcatatagttggag 38348064  T
Q  250 atg 252  Q
    |||    
T  38348065 atg 38348067  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 252
Target Start/End: Complemental strand, 26709365 - 26709260
Alignment:
Q  147 agtgaagtattcgctgcccttaacaccatgaaacccttcaaagcccccggcccagatggttttcaatgtatcttcttcaagcaatactggcatattgttg 246  Q
    |||||||| || || ||||| || ||||||||| | |  ||||| || || |||||||| || ||||||||||| || |||||||| ||||| ||| |||    
T  26709365 agtgaagtcttagccgccctcaataccatgaaatcttataaagcaccaggtccagatggcttccaatgtatcttttttaagcaatattggcacattattg 26709266  T
Q  247 gagatg 252  Q
    ||||||    
T  26709265 gagatg 26709260  T

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Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 136 - 252
Target Start/End: Original strand, 35232970 - 35233086
Alignment:
Q  136 ctattactaagagtgaagtattcgctgcccttaacaccatgaaacccttcaaagcccccggcccagatggttttcaatgtatcttcttcaagcaatactg 235  Q
    |||| ||||| | |||||| || |||||||| ||| |||||||||||| |||||| || || ||||||||||| || || || |||||||||||||| ||    
T  35232970 ctatcactaaaaatgaagtctttgctgccctaaactccatgaaaccctacaaagctccaggaccagatggtttccattgcatattcttcaagcaatattg 35233069  T
Q  236 gcatattgttggagatg 252  Q
    ||||||| |||||||||    
T  35233070 gcatattattggagatg 35233086  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 250
Target Start/End: Complemental strand, 12646740 - 12646651
Alignment:
Q  161 tgcccttaacaccatgaaacccttcaaagcccccggcccagatggttttcaatgtatcttcttcaagcaatactggcatattgttggaga 250  Q
    |||||| ||| |||||||||| | |||||| || ||||| ||||| || ||| | || |||||||||||||| |||||||| || |||||    
T  12646740 tgccctaaactccatgaaaccttacaaagcacctggcccggatggcttccaaagcattttcttcaagcaatattggcatatagtgggaga 12646651  T

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Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 159 - 247
Target Start/End: Complemental strand, 14654320 - 14654232
Alignment:
Q  159 gctgcccttaacaccatgaaacccttcaaagcccccggcccagatggttttcaatgtatcttcttcaagcaatactggcatattgttgg 247  Q
    |||||||||||| ||||||| |||| ||||||||| || ||||||||||| || || |||||||||||||| |||| ||||||| ||||    
T  14654320 gctgcccttaactccatgaagccctacaaagcccctggtccagatggtttccattgcatcttcttcaagcagtactagcatattattgg 14654232  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 161 - 252
Target Start/End: Original strand, 572698 - 572789
Alignment:
Q  161 tgcccttaacaccatgaaacccttcaaagcccccggcccagatggttttcaatgtatcttcttcaagcaatactggcatattgttggagatg 252  Q
    |||||||||| |||||||||||| |||||| ||||| |||||||| || || || ||||||||||| ||||| ||||| || ||||||||||    
T  572698 tgcccttaactccatgaaaccctacaaagcacccgggccagatggcttccattgcatcttcttcaaacaatattggcacatagttggagatg 572789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 149 - 252
Target Start/End: Complemental strand, 35135872 - 35135769
Alignment:
Q  149 tgaagtattcgctgcccttaacaccatgaaacccttcaaagcccccggcccagatggttttcaatgtatcttcttcaagcaatactggcatattgttgga 248  Q
    |||||| ||||||||||| ||| | ||||| || | ||||||||| || || || || ||||| || || |||||||||||||||||||| ||||| |||    
T  35135872 tgaagtgttcgctgccctcaactctatgaagccatacaaagcccctggtcctgacgggtttcattgcattttcttcaagcaatactggcacattgtcgga 35135773  T
Q  249 gatg 252  Q
    ||||    
T  35135772 gatg 35135769  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 252
Target Start/End: Original strand, 19264911 - 19265013
Alignment:
Q  150 gaagtattcgctgcccttaacaccatgaaacccttcaaagcccccggcccagatggttttcaatgtatcttcttcaagcaatactggcatattgttggag 249  Q
    ||||| ||||||||||| ||| | ||||| || | ||||||||| || || ||||| ||||| || || |||||||| ||||||||||| ||||| ||||    
T  19264911 gaagtgttcgctgccctcaactctatgaagccatacaaagcccctggtcctgatgggtttcattgcattttcttcaaacaatactggcacattgtcggag 19265010  T
Q  250 atg 252  Q
    |||    
T  19265011 atg 19265013  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 247
Target Start/End: Original strand, 16321953 - 16322041
Alignment:
Q  159 gctgcccttaacaccatgaaacccttcaaagcccccggcccagatggttttcaatgtatcttcttcaagcaatactggcatattgttgg 247  Q
    |||||||| ||| |||||||||||| |||||| || || || ||||| ||||| || || ||||| || ||||||||||| ||||||||    
T  16321953 gctgccctcaactccatgaaaccctacaaagcacctggtcccgatggctttcattgcattttctttaaacaatactggcacattgttgg 16322041  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 250
Target Start/End: Original strand, 177033 - 177088
Alignment:
Q  195 ggcccagatggttttcaatgtatcttcttcaagcaatactggcatattgttggaga 250  Q
    |||||||||||||||||||| ||||| ||||| ||||| ||||| |||||| ||||    
T  177033 ggcccagatggttttcaatgcatctttttcaaacaatattggcacattgttagaga 177088  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 162 - 247
Target Start/End: Complemental strand, 46785115 - 46785030
Alignment:
Q  162 gcccttaacaccatgaaacccttcaaagcccccggcccagatggttttcaatgtatcttcttcaagcaatactggcatattgttgg 247  Q
    ||||| ||| |||||||||||| |||| | || || || |||||||| ||||| ||||||||||| ||||||||||| ||||||||    
T  46785115 gccctcaactccatgaaaccctacaaatctcctggtccggatggtttccaatgcatcttcttcaaacaatactggcacattgttgg 46785030  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 174 - 241
Target Start/End: Original strand, 14307303 - 14307370
Alignment:
Q  174 atgaaacccttcaaagcccccggcccagatggttttcaatgtatcttcttcaagcaatactggcatat 241  Q
    |||||||| | |||| || | |||||||||||||||||||| || |||||||| ||||| ||||||||    
T  14307303 atgaaaccttacaaatcctctggcccagatggttttcaatgcattttcttcaaacaatattggcatat 14307370  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 241
Target Start/End: Original strand, 14291275 - 14291321
Alignment:
Q  195 ggcccagatggttttcaatgtatcttcttcaagcaatactggcatat 241  Q
    |||||||||||||||||||| || |||||||| ||||| ||||||||    
T  14291275 ggcccagatggttttcaatgcattttcttcaaacaatattggcatat 14291321  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 252
Target Start/End: Original strand, 43922642 - 43922732
Alignment:
Q  162 gcccttaacaccatgaaacccttcaaagcccccggcccagatggttttcaatgtatcttcttcaagcaatactggcatattgttggagatg 252  Q
    |||||| || |||||||| ||| ||||||| | || || ||||| ||||||||||||||||| ||  | || ||||| |||||||||||||    
T  43922642 gcccttcactccatgaaatcctacaaagcctctggtccggatgggtttcaatgtatcttctttaaatagtattggcacattgttggagatg 43922732  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 244
Target Start/End: Original strand, 48846453 - 48846535
Alignment:
Q  162 gcccttaacaccatgaaacccttcaaagcccccggcccagatggttttcaatgtatcttcttcaagcaatactggcatattgt 244  Q
    |||||| || |||||||||| | ||||||||| || || ||||| ||||||||||||||||| || || || ||||| |||||    
T  48846453 gcccttcactccatgaaaccttacaaagcccctggtcctgatgggtttcaatgtatcttctttaaacagtattggcacattgt 48846535  T

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Target: scaffold0214 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 172 - 252
Target Start/End: Original strand, 8484 - 8564
Alignment:
Q  172 ccatgaaacccttcaaagcccccggcccagatggttttcaatgtatcttcttcaagcaatactggcatattgttggagatg 252  Q
    ||||||| |||| ||||||||| ||||| ||||||||||| ||||| ||||| || ||||  ||||| |||||||||||||    
T  8484 ccatgaagccctacaaagcccctggccctgatggttttcattgtattttctttaaacaattttggcacattgttggagatg 8564  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 250
Target Start/End: Complemental strand, 23208499 - 23208421
Alignment:
Q  172 ccatgaaacccttcaaagcccccggcccagatggttttcaatgtatcttcttcaagcaatactggcatattgttggaga 250  Q
    |||||||||| | ||||||||| ||||| || || || || |||||||||||||| ||||| |||||||| ||||||||    
T  23208499 ccatgaaaccatacaaagcccctggcccggacggcttccattgtatcttcttcaaacaatattggcatatagttggaga 23208421  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 159 - 252
Target Start/End: Complemental strand, 16770607 - 16770514
Alignment:
Q  159 gctgcccttaacaccatgaaacccttcaaagcccccggcccagatggttttcaatgtatcttcttcaagcaatactggcatattgttggagatg 252  Q
    |||||||||||| | |||||||| | |||||| || || || |||||||| ||||| || || ||||| ||||||||||| ||| |||||||||    
T  16770607 gctgcccttaactctatgaaaccttacaaagcaccaggtccggatggtttccaatgcatttttttcaaacaatactggcacattattggagatg 16770514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 252
Target Start/End: Complemental strand, 1579792 - 1579712
Alignment:
Q  172 ccatgaaacccttcaaagcccccggcccagatggttttcaatgtatcttcttcaagcaatactggcatattgttggagatg 252  Q
    |||||||||||| ||||||||| ||  | ||||  ||||||||||||||||| ||  |||| ||||| |||||||||||||    
T  1579792 ccatgaaaccctacaaagcccctggttcggatgagtttcaatgtatcttctttaaaaaatattggcacattgttggagatg 1579712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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