View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0899_low_23 (Length: 270)
Name: NF0899_low_23
Description: NF0899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0899_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 48 - 240
Target Start/End: Original strand, 17461657 - 17461849
Alignment:
| Q |
48 |
accaatgaccaaggtcaagtgatggagagctcaacaatgctgttcttgagacatctgtttgacttactcaactaatatccatgttttttgttctgattga |
147 |
Q |
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| T |
17461657 |
accaatgaccaaggtcaagtgatggagagctcaacaatgctgttcttgagacatctgattgacttactcaactaatatcaatgttttttgttctgattga |
17461756 |
T |
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| Q |
148 |
ggttctatttgtttgatctaattcgtagtgttaagtatacaaatttgagtaggtggagttgtaaatgcatattagtatattactcattttctt |
240 |
Q |
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| T |
17461757 |
ggttctatttgtttgatctaattcgtagtgttaagtatacaaatttgagtaggtggagttgtaaatgcatattagtatattactcattttctt |
17461849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 128 - 199
Target Start/End: Complemental strand, 17455169 - 17455098
Alignment:
| Q |
128 |
atgttttttgttctgattgaggttctatttgtttgatctaattcgtagtgttaagtatacaaatttgagtag |
199 |
Q |
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| T |
17455169 |
atgtcttttgttctgattgagggtctatttgtttgatctaatgcgtagtgctaagaatacagatttgagtag |
17455098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 95
Target Start/End: Complemental strand, 17455214 - 17455171
Alignment:
| Q |
52 |
atgaccaaggtcaagtgatggagagctcaacaatgctgttcttg |
95 |
Q |
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| T |
17455214 |
atgaccaagatcaagtgatggagagttcaacaatgctgttcttg |
17455171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 57 - 117
Target Start/End: Original strand, 52143069 - 52143129
Alignment:
| Q |
57 |
caaggtcaagtgatggagagctcaacaatgctgttcttgagacatctgtttgacttactca |
117 |
Q |
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||||||||||| | ||||||||||||||||||||||||| || |||| |||||||||||| |
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| T |
52143069 |
caaggtcaagtaacggagagctcaacaatgctgttcttgggagatctaattgacttactca |
52143129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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