View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0899_low_31 (Length: 247)

Name: NF0899_low_31
Description: NF0899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0899_low_31
NF0899_low_31
[»] chr6 (8 HSPs)
chr6 (1-236)||(7847737-7847975)
chr6 (136-236)||(14745087-14745187)
chr6 (162-236)||(27122284-27122358)
chr6 (136-199)||(31475220-31475283)
chr6 (72-208)||(8885526-8885657)
chr6 (136-205)||(31495050-31495119)
chr6 (136-205)||(31500436-31500505)
chr6 (136-205)||(31514939-31515008)
[»] chr4 (4 HSPs)
chr4 (1-236)||(6820712-6820950)
chr4 (48-236)||(3576756-3576939)
chr4 (136-236)||(17418103-17418203)
chr4 (136-236)||(19728910-19729011)
[»] chr2 (6 HSPs)
chr2 (48-236)||(35922889-35923074)
chr2 (48-233)||(22521124-22521308)
chr2 (48-236)||(23907182-23907366)
chr2 (137-226)||(39527691-39527780)
chr2 (136-236)||(23246792-23246893)
chr2 (136-236)||(23247701-23247798)
[»] chr7 (2 HSPs)
chr7 (136-223)||(3089753-3089840)
chr7 (56-118)||(33571649-33571712)
[»] scaffold0061 (1 HSPs)
scaffold0061 (136-231)||(18584-18679)
[»] scaffold1043 (1 HSPs)
scaffold1043 (164-236)||(1890-1962)
[»] chr8 (1 HSPs)
chr8 (164-236)||(17862709-17862781)
[»] chr5 (2 HSPs)
chr5 (138-209)||(19019319-19019391)
chr5 (139-227)||(25933205-25933292)
[»] scaffold0170 (1 HSPs)
scaffold0170 (48-236)||(16642-16828)
[»] chr3 (1 HSPs)
chr3 (139-197)||(1767210-1767268)
[»] scaffold0010 (1 HSPs)
scaffold0010 (48-236)||(141651-141836)
[»] scaffold0289 (1 HSPs)
scaffold0289 (139-227)||(10110-10196)


Alignment Details
Target: chr6 (Bit Score: 119; Significance: 6e-61; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 7847737 - 7847975
Alignment:
Q  1 tttcgagaacatgtagcagtataaactactgagaagaaagcgtaagcaa----gtcaaggtcatatcatatcacaaacataatattcaaaacttgaagag 96  Q
    |||||||||||||||  | |||||| || |||||||||  |||||||||    ||||| ||||||||| |||||||||||||||||| |||||||||||     
T  7847737 tttcgagaacatgtaataatataaaataatgagaagaacacgtaagcaattaagtcaaagtcatatcacatcacaaacataatattctaaacttgaagaa 7847836  T
Q  97 catactagatcaactcaatccaagttagtnnnnnnnnngaatatcattacaacataagaatcaatatcttcacaaacacaatgtgaaaattcaattcaaa 196  Q
     ||||||||||||||||||||||||||||         |||||||| ||||||||||||| ||| ||||||||||||||||||| |||||||||||||||    
T  7847837 tatactagatcaactcaatccaagttagtaaaaaaaa-gaatatcaatacaacataagaaccaagatcttcacaaacacaatgtcaaaattcaattcaaa 7847935  T
Q  197 aatagtcacaacacatatagtcaccaataatcatcttcat 236  Q
    ||||||| |||||||||||||||||||||| |||||||||    
T  7847936 aatagtcgcaacacatatagtcaccaataaccatcttcat 7847975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 136 - 236
Target Start/End: Original strand, 14745087 - 14745187
Alignment:
Q  136 aatatcattacaacataagaatcaatatcttcacaaacacaatgtgaaaattcaattcaaaaatagtcacaacacatatagtcaccaataatcatcttca 235  Q
    |||||||||||| | |||||| ||| ||||||||||||||||||| | |||||||||| ||| |||||||||||||||||||||||||||| ||||||||    
T  14745087 aatatcattacagcctaagaaccaaaatcttcacaaacacaatgtcacaattcaattccaaactagtcacaacacatatagtcaccaataaccatcttca 14745186  T
Q  236 t 236  Q
    |    
T  14745187 t 14745187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 162 - 236
Target Start/End: Complemental strand, 27122358 - 27122284
Alignment:
Q  162 atcttcacaaacacaatgtgaaaattcaattcaaaaatagtcacaacacatatagtcaccaataatcatcttcat 236  Q
    ||||||||||||||||||| | |||||||||  |||||||||||||| |||||||||| ||||||| ||||||||    
T  27122358 atcttcacaaacacaatgtcacaattcaatttcaaaatagtcacaactcatatagtcatcaataattatcttcat 27122284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 136 - 199
Target Start/End: Complemental strand, 31475283 - 31475220
Alignment:
Q  136 aatatcattacaacataagaatcaatatcttcacaaacacaatgtgaaaattcaattcaaaaat 199  Q
    ||||||||||| ||||||||| ||| ||||||||||||||||||| | |||||||||| |||||    
T  31475283 aatatcattacgacataagaaccaaaatcttcacaaacacaatgtcacaattcaattctaaaat 31475220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 72 - 208
Target Start/End: Original strand, 8885526 - 8885657
Alignment:
Q  72 aacataatattcaaaac-ttgaagagcatactagatcaactcaatccaagttagtnnnnnnnnngaatatcattacaacataagaatcaatatcttcaca 170  Q
    ||||||||||||||||| |||||||  |||||| ||||||||||||||  |||||          ||||||||||||||||||||| | | |||||||||    
T  8885526 aacataatattcaaaaccttgaagaatatactacatcaactcaatccacattagtaaaa------aatatcattacaacataagaaccgaaatcttcaca 8885619  T
Q  171 aacacaatgtgaaaattcaattcaaaaatagtcacaac 208  Q
    || ||||||| | |||||||| | |||||| |||||||    
T  8885620 aatacaatgtcacaattcaatcccaaaataatcacaac 8885657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 136 - 205
Target Start/End: Complemental strand, 31495119 - 31495050
Alignment:
Q  136 aatatcattacaacataagaatcaatatcttcacaaacacaatgtgaaaattcaattcaaaaatagtcac 205  Q
    |||||||||||   ||||||| ||| ||||||||||||||||||| | |||||||||| |||||||||||    
T  31495119 aatatcattacggaataagaaccaaaatcttcacaaacacaatgtcacaattcaattctaaaatagtcac 31495050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 136 - 205
Target Start/End: Complemental strand, 31500505 - 31500436
Alignment:
Q  136 aatatcattacaacataagaatcaatatcttcacaaacacaatgtgaaaattcaattcaaaaatagtcac 205  Q
    |||||||||||   ||||||| ||| ||||||||||||||||||| | |||||||||| |||||||||||    
T  31500505 aatatcattacggaataagaaccaaaatcttcacaaacacaatgtcacaattcaattctaaaatagtcac 31500436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 136 - 205
Target Start/End: Complemental strand, 31515008 - 31514939
Alignment:
Q  136 aatatcattacaacataagaatcaatatcttcacaaacacaatgtgaaaattcaattcaaaaatagtcac 205  Q
    |||||||||||   ||||||| ||| ||||||||||||||||||| | |||||||||| |||||||||||    
T  31515008 aatatcattacggaataagaaccaaaatcttcacaaacacaatgtcacaattcaattctaaaatagtcac 31514939  T

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Target: chr4 (Bit Score: 115; Significance: 2e-58; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 6820712 - 6820950
Alignment:
Q  1 tttcgagaacatgtagcagtataaactactgagaagaaagcgtaagcaa----gtcaaggtcatatcatatcacaaacataatattcaaaacttgaagag 96  Q
    |||||||||||||||  |||||||| || |||||||||   ||||||||    ||||| ||||||||| ||||||||||||||||| ||||||||||||     
T  6820712 tttcgagaacatgtaatagtataaaataatgagaagaacatgtaagcaattaagtcaaagtcatatcacatcacaaacataatattgaaaacttgaagaa 6820811  T
Q  97 catactagatcaactcaatccaagttagtnnnnnnnnngaatatcattacaacataagaatcaatatcttcacaaacacaatgtgaaaattcaattcaaa 196  Q
     ||||||||||||||||||||| ||||||         |||||||||||||||||||||| ||| ||||||||||||||||||| |||||| ||||| ||    
T  6820812 tatactagatcaactcaatccacgttagtaaaaaaaa-gaatatcattacaacataagaaccaagatcttcacaaacacaatgtcaaaatttaattccaa 6820910  T
Q  197 aatagtcacaacacatatagtcaccaataatcatcttcat 236  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  6820911 aatagtcacaacacatatagtcaccaataaccatcttcat 6820950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 48 - 236
Target Start/End: Complemental strand, 3576939 - 3576756
Alignment:
Q  48 aagtcaaggtcatatcatatcacaaacataatattca-aaacttgaagagcatactagatcaactcaatccaagttagtnnnnnnnnngaatatcattac 146  Q
    ||||||| ||||||| | ||||||||||||||||| | ||||||||| |  |||||| ||||||||||||||  ||| |          |||||||||||    
T  3576939 aagtcaaagtcatatgacatcacaaacataatatttagaaacttgaaaaatatactatatcaactcaatccacattaataaaa------aatatcattac 3576846  T
Q  147 aacataagaatcaatatcttcacaaacacaatgtgaaaattcaattcaaaaatagtcacaacacatatagtcaccaataatcatcttcat 236  Q
    | ||||||||  || | ||||||||||||||||| | |||||||||| ||||||||||||| |||||||||||||||||| |||||||||    
T  3576845 atcataagaactaaaaccttcacaaacacaatgtcacaattcaattccaaaatagtcacaaaacatatagtcaccaataaccatcttcat 3576756  T

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Target: chr4; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 136 - 236
Target Start/End: Original strand, 17418103 - 17418203
Alignment:
Q  136 aatatcattacaacataagaatcaatatcttcacaaacacaatgtgaaaattcaattcaaaaatagtcacaacacatatagtcaccaataatcatcttca 235  Q
    ||||| |||||| | |||||| ||| ||||||||||||||||||| | |||||||||  ||| |||||||||||||||||||||||||||| ||||||||    
T  17418103 aatataattacagcttaagaaccaaaatcttcacaaacacaatgtcacaattcaatttcaaactagtcacaacacatatagtcaccaataaccatcttca 17418202  T
Q  236 t 236  Q
    |    
T  17418203 t 17418203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 136 - 236
Target Start/End: Complemental strand, 19729011 - 19728910
Alignment:
Q  136 aatatcattacaacataagaatcaatat-cttcacaaacacaatgtgaaaattcaattcaaaaatagtcacaacacatatagtcaccaataatcatcttc 234  Q
    |||||||||||| | |||||| ||| |  ||||||||||||||||| | |||||||||  |||  |||||||| |||||||||||||||||| |||||||    
T  19729011 aatatcattacagcttaagaaccaaaaaacttcacaaacacaatgtcacaattcaatttcaaacaagtcacaaaacatatagtcaccaataaccatcttc 19728912  T
Q  235 at 236  Q
    ||    
T  19728911 at 19728910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 48 - 236
Target Start/End: Complemental strand, 35923074 - 35922889
Alignment:
Q  48 aagtcaaggtcatatcatatcacaaacataatattcaaaa-cttgaagagcatactagatcaactcaatccaagttagtnnnnnnnnngaatatcattac 146  Q
    ||||||| ||| ||||| ||||||||||||||||||| || ||||||||  ||| || ||||||||||||||  |||||          |||||||||||    
T  35923074 aagtcaaagtcgtatcacatcacaaacataatattcagaatcttgaagaatatattatatcaactcaatccacattagtaaaaaa----aatatcattac 35922979  T
Q  147 aacataagaatcaatatcttcacaaacacaatgtgaaaattcaattcaaaaatagtcacaacacatatagtcaccaataatcatcttcat 236  Q
    | | |||||||||| |||||||| ||||| |||| | |||||||||| |||||| |||||||||||||||||||||||||||||||||||    
T  35922978 atcgtaagaatcaaaatcttcactaacacgatgtcataattcaattccaaaataatcacaacacatatagtcaccaataatcatcttcat 35922889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 48 - 233
Target Start/End: Original strand, 22521124 - 22521308
Alignment:
Q  48 aagtcaaggtcatatcatatcacaaacataatattcaaaac-ttgaagagcatactagatcaactcaatccaagttagtnnnnnnnnngaatatcattac 146  Q
    ||||||| ||| ||||| ||||||||||| ||||| ||||| |||||||  |||||||||||||||||||||  ||| |          |||||||||||    
T  22521124 aagtcaaagtcgtatcacatcacaaacatgatatttaaaaccttgaagaatatactagatcaactcaatccacattaatgaaaaaaa--aatatcattac 22521221  T
Q  147 aacataagaatcaatatcttcacaaacacaatgtgaaaattcaattcaaaaatagtcacaacacatatagtcaccaataatcatctt 233  Q
    | |||||||| ||| |||||||||| |||||||  | |||| ||||| |||||||||||||||||||||||||||||||| ||||||    
T  22521222 atcataagaaccaaaatcttcacaagcacaatgccacaatttaattccaaaatagtcacaacacatatagtcaccaataaccatctt 22521308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 48 - 236
Target Start/End: Original strand, 23907182 - 23907366
Alignment:
Q  48 aagtcaaggtcatatcatatcacaaacataatattcaaaac-ttgaagagcatactagatcaactcaatccaagttagtnnnnnnnnngaatatcattac 146  Q
    ||||||| ||| ||||| ||||||||||||||||||| ||| |||||||  |||||| |||| || ||||||  |||||          |||||||||||    
T  23907182 aagtcaaagtcctatcacatcacaaacataatattcagaaccttgaagaatatactatatcatcttaatccatattagtagaa------aatatcattac 23907275  T
Q  147 aacataagaatcaatat-cttcacaaacacaatgtgaaaattcaattcaaaaatagtcacaacacatatagtcaccaataatcatcttcat 236  Q
    | | |||||| ||| |  ||||||||||||||||| | |||||||||| ||| ||||||||| |||||||||||||||||| |||||||||    
T  23907276 agcttaagaaccaaaaagcttcacaaacacaatgtcacaattcaattccaaactagtcacaagacatatagtcaccaataaccatcttcat 23907366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 137 - 226
Target Start/End: Complemental strand, 39527780 - 39527691
Alignment:
Q  137 atatcattacaacataagaatcaatatcttcacaaacacaatgtgaaaattcaattcaaaaatagtcacaacacatatagtcaccaataa 226  Q
    |||| ||||||||||||||| ||| |||||||||||||||| || | |||||||||| |||| |||||||||||| ||| ||| ||||||    
T  39527780 atataattacaacataagaaccaaaatcttcacaaacacaacgtcacaattcaattccaaaagagtcacaacacaaataatcaacaataa 39527691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 136 - 236
Target Start/End: Complemental strand, 23246893 - 23246792
Alignment:
Q  136 aatatcattacaacataagaatcaatatcttcacaaacacaatgtgaaaattcaattcaaaaatagtc-acaacacatatagtcaccaataatcatcttc 234  Q
    |||||||||||| |||||||| ||| || ||||||||||| | || | |||||||||| ||||||||| | || | ||||||||||||||||||||| ||    
T  23246893 aatatcattacatcataagaaccaaaattttcacaaacaccacgtcacaattcaattccaaaatagtcaaaaaaatatatagtcaccaataatcatcatc 23246794  T
Q  235 at 236  Q
    ||    
T  23246793 at 23246792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 136 - 236
Target Start/End: Complemental strand, 23247798 - 23247701
Alignment:
Q  136 aatatcattacaacataagaatcaatatcttcacaaacacaatgtgaaaattcaattcaaaaatagtcacaacacatatagtcaccaataatcatcttca 235  Q
    |||||||||||| |||||||| ||| || ||||||||||| | || | |||||||||| |||||||||| ||||    ||||||||||||| |||| |||    
T  23247798 aatatcattacatcataagaaccaaaattttcacaaacaccacgtcacaattcaattccaaaatagtcaaaaca---ttagtcaccaataaccatcatca 23247702  T

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Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 136 - 223
Target Start/End: Complemental strand, 3089840 - 3089753
Alignment:
Q  136 aatatcattacaacataagaatcaatatcttcacaaacacaatgtgaaaattcaattcaaaaatagtcacaacacatatagtcaccaa 223  Q
    ||||||||||||||||| ||| ||| ||||||||||||||||||| | ||||| |||| |||||||||| ||||||||| || |||||    
T  3089840 aatatcattacaacataggaaccaaaatcttcacaaacacaatgtcacaattcgattccaaaatagtcaaaacacatattgtgaccaa 3089753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 118
Target Start/End: Complemental strand, 33571712 - 33571649
Alignment:
Q  56 gtcatatcatatcacaaacataatattcaaaac-ttgaagagcatactagatcaactcaatcca 118  Q
    ||||||||| ||||||||||||||||| | ||| |||||||  |||||| ||||||||||||||    
T  33571712 gtcatatcacatcacaaacataatatttagaacattgaagaatatactatatcaactcaatcca 33571649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 136 - 231
Target Start/End: Complemental strand, 18679 - 18584
Alignment:
Q  136 aatatcattacaacataagaatcaatatcttcacaaacacaatgtgaaaattcaattcaaaaatagtcacaacacatatagtcaccaataatcatc 231  Q
    |||||||||||| |||||||| ||| |||||||||| ||  |||| | |||||||||| |||||||||| |||| |||||||||| ||||| ||||    
T  18679 aatatcattacatcataagaaccaaaatcttcacaatcagcatgtcataattcaattccaaaatagtcaaaacatatatagtcactaataaccatc 18584  T

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Target: scaffold1043 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold1043
Description:

Target: scaffold1043; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 164 - 236
Target Start/End: Complemental strand, 1962 - 1890
Alignment:
Q  164 cttcacaaacacaatgtgaaaattcaattcaaaaatagtcacaacacatatagtcaccaataatcatcttcat 236  Q
    ||||| ||||||||||| | |||||||||  |||  |||||||| ||||||||||||||||||||||||||||    
T  1962 cttcataaacacaatgtcacaattcaatttcaaataagtcacaaaacatatagtcaccaataatcatcttcat 1890  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 164 - 236
Target Start/End: Complemental strand, 17862781 - 17862709
Alignment:
Q  164 cttcacaaacacaatgtgaaaattcaattcaaaaatagtcacaacacatatagtcaccaataatcatcttcat 236  Q
    ||||||||||||||||| | |||||||||  |||  |||||||| ||||||||| |||||||| |||||||||    
T  17862781 cttcacaaacacaatgtcataattcaatttcaaacaagtcacaaaacatatagtaaccaataaccatcttcat 17862709  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 138 - 209
Target Start/End: Original strand, 19019319 - 19019391
Alignment:
Q  138 tatcattacaacataagaatcaatatcttcacaaaca-caatgtgaaaattcaattcaaaaatagtcacaaca 209  Q
    ||||||||||||||||||| ||| ||||||| ||||| |||||| | |||||||||| |||||||||| ||||    
T  19019319 tatcattacaacataagaaccaaaatcttcataaacaccaatgttacaattcaattccaaaatagtcataaca 19019391  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 139 - 227
Target Start/End: Complemental strand, 25933292 - 25933205
Alignment:
Q  139 atcattacaacataagaatcaatatcttcacaaacacaatgtgaaaattcaattcaaaaatagtcacaacacatatagtcaccaataat 227  Q
    |||||||||||| ||||||||| ||||||||| ||| ||||| | ||||||| || | ||||||||||||| | |||||||| ||||||    
T  25933292 atcattacaacaaaagaatcaaaatcttcacatacataatgttacaattcaa-tccagaatagtcacaacaaagatagtcacaaataat 25933205  T

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Target: scaffold0170 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 48 - 236
Target Start/End: Original strand, 16642 - 16828
Alignment:
Q  48 aagtcaaggtcatatcatatcacaaacataatattcaaaac-ttgaagagcatactagatcaactcaatccaagttagtnnnnnnnnngaatatcattac 146  Q
    ||||||| ||| ||| | ||||||||||||||||||| ||| |||||||  |||||| |||| |||||||||  |||||          |||||||||||    
T  16642 aagtcaaagtcgtataacatcacaaacataatattcagaaccttgaagaatatactatatcatctcaatccatattagtagaa------aatatcattac 16735  T
Q  147 aacataagaatcaatat-cttcacaaacacaatgtgaaaattcaattcaaaaatagtcacaacac--atatagtcaccaataatcatcttcat 236  Q
    ||| |||||| ||| |  |||||||| || ||||  | |||||||||| ||| ||||||||||||  ||||| |||||||||| |||||||||    
T  16736 aacttaagaaccaaaaagcttcacaaccataatgacacaattcaattccaaactagtcacaacacatatataatcaccaataaccatcttcat 16828  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 139 - 197
Target Start/End: Complemental strand, 1767268 - 1767210
Alignment:
Q  139 atcattacaacataagaatcaatatcttcacaaacacaatgtgaaaattcaattcaaaa 197  Q
    ||||||||||||||| |||||| ||||||||||||||||||| | || ||||| |||||    
T  1767268 atcattacaacataaaaatcaaaatcttcacaaacacaatgttacaagtcaatccaaaa 1767210  T

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Target: scaffold0010 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 236
Target Start/End: Original strand, 141651 - 141836
Alignment:
Q  48 aagtcaaggtcatatcatatcacaaacataatattca-aaacttgaagagcatactagatcaactcaatccaagttagtnnnnnnnnngaatatcattac 146  Q
    ||||||| ||||||||| |||||||||||||||| || || ||||||||  |||||| |||| |||||||||  |||||          |||||||||||    
T  141651 aagtcaaagtcatatcacatcacaaacataatatccagaaccttgaagaatatactatatcatctcaatccatattagtagaa------aatatcattac 141744  T
Q  147 aacataagaatc-aatatcttcac-aaacacaatgtgaaaattcaattcaaaaatagtcacaacacatatagtcaccaataatcatcttcat 236  Q
    | | |||||| | || | |||||| ||||||||||| | |||||||||  |||  |||||||| | ||||||||||| |||| |||||||||    
T  141745 agcttaagaaccaaaaaccttcacaaaacacaatgtcacaattcaatttcaaacaagtcacaaaagatatagtcaccgataaccatcttcat 141836  T

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Target: scaffold0289 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0289
Description:

Target: scaffold0289; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 227
Target Start/End: Complemental strand, 10196 - 10110
Alignment:
Q  139 atcattacaacataagaatcaatatcttcacaaacacaatgtgaaaattcaattcaaaaatagtcacaacacatatagtcaccaataat 227  Q
    |||||||||||||||||||||| || ||||||||||  || | | |||||||||| |||||| ||  |||| | |||||||||||||||    
T  10196 atcattacaacataagaatcaa-attttcacaaacatgatatcacaattcaattc-aaaatattcgaaacaaagatagtcaccaataat 10110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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