View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0899_low_32 (Length: 240)

Name: NF0899_low_32
Description: NF0899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0899_low_32
NF0899_low_32
[»] chr6 (11 HSPs)
chr6 (145-240)||(7847344-7847439)
chr6 (56-111)||(7841166-7841221)
chr6 (54-111)||(7846974-7847031)
chr6 (119-240)||(34486463-34486583)
chr6 (61-111)||(7840944-7840994)
chr6 (119-240)||(14744504-14744626)
chr6 (59-111)||(7837608-7837658)
chr6 (119-240)||(8885014-8885132)
chr6 (6-35)||(7837553-7837582)
chr6 (6-35)||(7840885-7840914)
chr6 (6-35)||(7846926-7846955)
[»] chr4 (2 HSPs)
chr4 (127-240)||(6820304-6820417)
chr4 (119-240)||(19729473-19729595)
[»] scaffold0289 (1 HSPs)
scaffold0289 (119-240)||(10620-10741)
[»] chr2 (4 HSPs)
chr2 (113-238)||(20186345-20186470)
chr2 (141-238)||(22524315-22524412)
chr2 (119-240)||(23906686-23906808)
chr2 (119-173)||(39528287-39528343)
[»] chr7 (1 HSPs)
chr7 (119-240)||(16074960-16075082)
[»] scaffold0042 (1 HSPs)
scaffold0042 (119-173)||(60425-60479)
[»] chr8 (2 HSPs)
chr8 (61-111)||(3647326-3647376)
chr8 (119-173)||(17863344-17863399)
[»] chr1 (1 HSPs)
chr1 (119-208)||(20842362-20842452)
[»] scaffold1043 (1 HSPs)
scaffold1043 (118-240)||(2448-2571)
[»] scaffold0010 (1 HSPs)
scaffold0010 (119-240)||(141180-141302)
[»] chr5 (1 HSPs)
chr5 (124-205)||(8795073-8795155)
[»] scaffold0061 (1 HSPs)
scaffold0061 (118-167)||(19214-19264)


Alignment Details
Target: chr6 (Bit Score: 96; Significance: 3e-47; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 145 - 240
Target Start/End: Original strand, 7847344 - 7847439
Alignment:
Q  145 tattactattatttattcaaaaattgagtaatattcgtaacggggagtgtcaaataaaaactttcaaactaatataagaatttttccacaagattt 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7847344 tattactattatttattcaaaaattgagtaatattcgtaacggggagtgtcaaataaaaactttcaaactaatataagaatttttccacaagattt 7847439  T

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Target: chr6; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 56 - 111
Target Start/End: Complemental strand, 7841221 - 7841166
Alignment:
Q  56 taaagacaatttgtgtacggaaaatgctgcaccacacatatgtggaaaacacttgg 111  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  7841221 taaagacaatttgtgtagggaaaatgctgcaccacacatatgtggaaaacacttgg 7841166  T

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Target: chr6; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 54 - 111
Target Start/End: Original strand, 7846974 - 7847031
Alignment:
Q  54 ggtaaagacaatttgtgtacggaaaatgctgcaccacacatatgtggaaaacacttgg 111  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  7846974 ggtaaagacaatttgtgtacggagaatgctgcaccacacatatgtggaaagcacttgg 7847031  T

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Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 119 - 240
Target Start/End: Original strand, 34486463 - 34486583
Alignment:
Q  119 tgtgacatcctaaatcccaaaataattattactattatttattcaaaaattgagtaatattcgtaacggggagtgtcaaataaaaactttcaaactaata 218  Q
    |||||||  |||||||||| |||||||||| ||||||||||||||||||| ||||   ||||| | ||| |||||| |||| ||||||||   | |||||    
T  34486463 tgtgacactctaaatcccataataattattcctattatttattcaaaaatagagtttgattcgcagcggagagtgtaaaat-aaaactttgctattaata 34486561  T
Q  219 taagaatttttccacaagattt 240  Q
    |||||||| | |||||||||||    
T  34486562 taagaattctcccacaagattt 34486583  T

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Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 61 - 111
Target Start/End: Original strand, 7840944 - 7840994
Alignment:
Q  61 acaatttgtgtacggaaaatgctgcaccacacatatgtggaaaacacttgg 111  Q
    ||||||||||||| ||||||||||||| |||||||||||||||||| ||||    
T  7840944 acaatttgtgtactgaaaatgctgcactacacatatgtggaaaacatttgg 7840994  T

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Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 119 - 240
Target Start/End: Original strand, 14744504 - 14744626
Alignment:
Q  119 tgtgacatcctaaatcccaaaa-taattattactattatttattcaaaaattgagtaatattcgtaacggggagtgtcaaataaaaactttcaaactaat 217  Q
    ||||||| |||||||||||||| ||||||||||||||||| |||| ||||  ||||   ||||| | |||  | |||||||||||||||||   | ||||    
T  14744504 tgtgacaccctaaatcccaaaaataattattactattattgattcgaaaacagagtttgattcgcagcggaaaatgtcaaataaaaacttttctattaat 14744603  T
Q  218 ataagaatttttccacaagattt 240  Q
    ||||||||| |||||||| ||||    
T  14744604 ataagaattcttccacaaaattt 14744626  T

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Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 7837608 - 7837658
Alignment:
Q  59 agacaatttgtgtacggaaaatgctgcaccacacatatgtggaaaacacttgg 111  Q
    ||||||||||||||||||||||| |||||  ||||||||||||||||||||||    
T  7837608 agacaatttgtgtacggaaaatgttgcac--cacatatgtggaaaacacttgg 7837658  T

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Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 119 - 240
Target Start/End: Original strand, 8885014 - 8885132
Alignment:
Q  119 tgtgacatcctaaatcccaaaa-taattattactattatttattcaaaaattgagtaatattcgtaacggggagtgtcaaataaaaactttcaaactaat 217  Q
    ||||||| ||||||||| |||| ||||||||||||||||| || ||||||| ||||   ||||| |    |||| ||||||||||||||||   | ||||    
T  8885014 tgtgacaccctaaatcctaaaaataattattactattattcatccaaaaatagagtttgattcgca----ggagggtcaaataaaaacttttttaataat 8885109  T
Q  218 ataagaatttttccacaagattt 240  Q
    ||||||||| |||||||||||||    
T  8885110 ataagaattcttccacaagattt 8885132  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 35
Target Start/End: Original strand, 7837553 - 7837582
Alignment:
Q  6 ataaataacttgaaccaaatgactaacata 35  Q
    ||||||||||||||||||||||||||||||    
T  7837553 ataaataacttgaaccaaatgactaacata 7837582  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 35
Target Start/End: Original strand, 7840885 - 7840914
Alignment:
Q  6 ataaataacttgaaccaaatgactaacata 35  Q
    ||||||||||||||||||||||||||||||    
T  7840885 ataaataacttgaaccaaatgactaacata 7840914  T

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Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 35
Target Start/End: Original strand, 7846926 - 7846955
Alignment:
Q  6 ataaataacttgaaccaaatgactaacata 35  Q
    ||||||||||||||||||||||||||||||    
T  7846926 ataaataacttgaaccaaatgactaacata 7846955  T

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Target: chr4 (Bit Score: 82; Significance: 8e-39; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 127 - 240
Target Start/End: Original strand, 6820304 - 6820417
Alignment:
Q  127 cctaaatcccaaaataattattactattatttattcaaaaattgagtaatattcgtaacggggagtgtcaaataaaaactttcaaactaatataagaatt 226  Q
    |||||||| |||||||||||||||||||||||||| |||||||||||||||||  ||  || |||||||||||||||||||||||| |||||||||||||    
T  6820304 cctaaatctcaaaataattattactattatttatttaaaaattgagtaatatttatagtggagagtgtcaaataaaaactttcaaattaatataagaatt 6820403  T
Q  227 tttccacaagattt 240  Q
    ||||||||||||||    
T  6820404 tttccacaagattt 6820417  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 240
Target Start/End: Complemental strand, 19729595 - 19729473
Alignment:
Q  119 tgtgacatcctaaatcccaaaa-taattattactattatttattcaaaaattgagtaatattcgtaacggggagtgtcaaataaaaactt-tcaaactaa 216  Q
    ||||||| ||||||||| |||| ||||||||||||||||||| | |||||| ||||   ||||| | |||  ||||| | |||||||||| || || |||    
T  19729595 tgtgacaccctaaatccaaaaaataattattactattatttaattaaaaatagagtttgattcgcagcggaaagtgttagataaaaacttctctaa-taa 19729497  T
Q  217 tataagaatttttccacaagattt 240  Q
    |||| ||||| |||||||||||||    
T  19729496 tataggaattcttccacaagattt 19729473  T

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Target: scaffold0289 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0289
Description:

Target: scaffold0289; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 119 - 240
Target Start/End: Complemental strand, 10741 - 10620
Alignment:
Q  119 tgtgacatcctaaatcccaaaataattattactattatttattcaaaaattgagtaatattcgtaacggggagtgtcaaataaaaactttcaaactaata 218  Q
    ||||||| ||||||||||||| |||||||||||||||||||| ||||||| ||||   ||||| |   | ||||||||||||||||||||   | ||||     
T  10741 tgtgacaccctaaatcccaaactaattattactattatttatccaaaaatagagtttgattcgcagtagagagtgtcaaataaaaacttttctattaatt 10642  T
Q  219 taagaatttttccacaagattt 240  Q
    |||||||| | |||||||||||    
T  10641 taagaattctcccacaagattt 10620  T

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Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 113 - 238
Target Start/End: Complemental strand, 20186470 - 20186345
Alignment:
Q  113 gacatttgtgacatcctaaatcccaaaataattattactattatttattcaaaaattgagtaatattcgtaacggggagtgtcaaataaaaactttcaaa 212  Q
    ||||| ||||||| ||||||||| ||||||||||||||||||||||| | |||||| ||||   ||||| | |||  ||||| ||||||||| ||||  |    
T  20186470 gacatctgtgacaccctaaatccaaaaataattattactattatttaattaaaaatggagtttgattcgcagcggaaagtgttaaataaaaaatttctta 20186371  T
Q  213 ctaatataagaatttttccacaagat 238  Q
     |||||||| |||| |||||||||||    
T  20186370 ataatataaaaattcttccacaagat 20186345  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 141 - 238
Target Start/End: Original strand, 22524315 - 22524412
Alignment:
Q  141 taattattactattatttattcaaaaattgagtaatattcgtaacggggagtgtcaaataaaaactttcaaactaatataagaatttttccacaagat 238  Q
    ||||||||||||||||||| | |||||| ||||   ||||| | | | || ||||||||||||||||||  | ||||||||||||||||||| |||||    
T  22524315 taattattactattatttaattaaaaatagagtttaattcgcagcagagaatgtcaaataaaaactttcctaataatataagaatttttccataagat 22524412  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 240
Target Start/End: Original strand, 23906686 - 23906808
Alignment:
Q  119 tgtgacatcctaaatcccaa-aataattattactattatttattcaaaaattgagtaatattcgtaacggggagtgtcaaataaaaactt-tcaaactaa 216  Q
    ||||||| ||||||| |||| ||||||||||||||||||||| | |||||| ||||   ||||| | |||  |||||||||||||||||| || || | |    
T  23906686 tgtgacaccctaaattccaataataattattactattatttaattaaaaatagagtttgattcgcagcggaaagtgtcaaataaaaacttctctaa-tga 23906784  T
Q  217 tataagaatttttccacaagattt 240  Q
    |||| ||||| |||||||||||||    
T  23906785 tataggaattcttccacaagattt 23906808  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 173
Target Start/End: Complemental strand, 39528343 - 39528287
Alignment:
Q  119 tgtgacatcctaaatcccaaaa--taattattactattatttattcaaaaattgagt 173  Q
    ||||||| ||||||||| ||||  |||||||||||| ||||||||||||||| ||||    
T  39528343 tgtgacaccctaaatcctaaaaaataattattactactatttattcaaaaatagagt 39528287  T

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Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 119 - 240
Target Start/End: Complemental strand, 16075082 - 16074960
Alignment:
Q  119 tgtgacatcctaaatcccaaaa-taattattactattatttattcaaaaattgagtaatattcgtaacggggagtgtcaaataaaaactt-tcaaactaa 216  Q
    ||||||| |||||||||||||| ||||||||||||||||||| | |||||| ||||   ||||| |||||  ||||||| |||||||||| || || |||    
T  16075082 tgtgacaccctaaatcccaaaaataattattactattatttaattaaaaatagagtttgattcgcaacggaaagtgtcagataaaaacttctctaa-taa 16074984  T
Q  217 tataagaatttttccacaagattt 240  Q
    |||| ||||| |||||||||||||    
T  16074983 tataggaattcttccacaagattt 16074960  T

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Target: scaffold0042 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 119 - 173
Target Start/End: Complemental strand, 60479 - 60425
Alignment:
Q  119 tgtgacatcctaaatcccaaaataattattactattatttattcaaaaattgagt 173  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||    
T  60479 tgtgacatcctaaatcccataataattattcctattatttattcaaaaatagagt 60425  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 61 - 111
Target Start/End: Original strand, 3647326 - 3647376
Alignment:
Q  61 acaatttgtgtacggaaaatgctgcaccacacatatgtggaaaacacttgg 111  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||||||||    
T  3647326 acaaattgtgtacggaaaatgctgcagcacacatatgtggaaaacacttgg 3647376  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 173
Target Start/End: Complemental strand, 17863399 - 17863344
Alignment:
Q  119 tgtgacatcctaaatcccaaaa-taattattactattatttattcaaaaattgagt 173  Q
    ||||||| |||||||||||||| ||||||||||||||||||| | |||||| ||||    
T  17863399 tgtgacaccctaaatcccaaaaataattattactattatttaattaaaaatagagt 17863344  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 119 - 208
Target Start/End: Complemental strand, 20842452 - 20842362
Alignment:
Q  119 tgtgacatcctaaatccca-aaataattattactattatttattcaaaaattgagtaatattcgtaacggggagtgtcaaataaaaacttt 208  Q
    ||||||| ||||||||||| |||||||||| |||||||||||||||||||  ||||   ||||| | ||| ||||||||||||||||||||    
T  20842452 tgtgacaccctaaatcccataaataattatcactattatttattcaaaaagagagtttgattcgcagcggagagtgtcaaataaaaacttt 20842362  T

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Target: scaffold1043 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold1043
Description:

Target: scaffold1043; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 118 - 240
Target Start/End: Complemental strand, 2571 - 2448
Alignment:
Q  118 ttgtgacatcctaaatcccaaaa-taattattactattatttattcaaaaattgagtaatattcgtaacggggagtgtcaaataaaaactt-tcaaacta 215  Q
    |||||||| |||||||||||||| ||||||||||||||||||| | |||||| ||||   ||||| | |||  ||||| | |||||||||| || || ||    
T  2571 ttgtgacaccctaaatcccaaaaataattattactattatttaattaaaaatagagtttgattcgcagcggaaagtgttagataaaaacttctctaa-ta 2473  T
Q  216 atataagaatttttccacaagattt 240  Q
    ||||| ||||| |||||||||||||    
T  2472 atataggaattcttccacaagattt 2448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 119 - 240
Target Start/End: Original strand, 141180 - 141302
Alignment:
Q  119 tgtgacatcctaaatcccaaaa-taattattactattatttattcaaaaattgagtaatattcgtaacggggagtgtcaaataaaaactttcaaactaat 217  Q
    ||||||| |||||||||||||| ||||||||||||||||||| | |||||| ||||   ||||| | |||  ||||| | |||||||||||   | ||||    
T  141180 tgtgacaccctaaatcccaaaaataattattactattatttaattaaaaatagagtttgattcgcagcggaaagtgttagataaaaacttttctaataat 141279  T
Q  218 ataagaatttttccacaagattt 240  Q
    ||| ||||| |||||||| ||||    
T  141280 ataggaattcttccacaaaattt 141302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 124 - 205
Target Start/End: Complemental strand, 8795155 - 8795073
Alignment:
Q  124 catcctaaatcccaaaa-taattattactattatttattcaaaaattgagtaatattcgtaacggggagtgtcaaataaaaac 205  Q
    |||||||||| |||||| ||||||||||||||||||||||||||||  |||   ||||| | ||| || ||||||||||||||    
T  8795155 catcctaaattccaaaaataattattactattatttattcaaaaataaagtttgattcgcagcggagaatgtcaaataaaaac 8795073  T

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Target: scaffold0061 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 167
Target Start/End: Complemental strand, 19264 - 19214
Alignment:
Q  118 ttgtgacatcctaaatcccaaaa-taattattactattatttattcaaaaa 167  Q
    |||||||| | |||||||||||| |||||||||||||||||||||| ||||    
T  19264 ttgtgacaccttaaatcccaaaaataattattactattatttattcgaaaa 19214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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