View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0899_low_5 (Length: 489)

Name: NF0899_low_5
Description: NF0899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0899_low_5
NF0899_low_5
[»] chr7 (10 HSPs)
chr7 (30-483)||(25090121-25090580)
chr7 (399-483)||(25062595-25062679)
chr7 (401-483)||(25084206-25084288)
chr7 (399-483)||(25071298-25071382)
chr7 (179-256)||(4998443-4998520)
chr7 (78-229)||(19706078-19706231)
chr7 (402-478)||(25058388-25058464)
chr7 (191-244)||(38570074-38570127)
chr7 (105-197)||(19706246-19706338)
chr7 (184-254)||(19706368-19706438)
[»] chr2 (5 HSPs)
chr2 (46-255)||(11482691-11482901)
chr2 (46-256)||(27640770-27640982)
chr2 (31-256)||(8263374-8263600)
chr2 (179-256)||(17354457-17354534)
chr2 (187-256)||(42473875-42473944)
[»] scaffold0778 (2 HSPs)
scaffold0778 (46-252)||(1173-1382)
scaffold0778 (327-359)||(1071-1103)
[»] chr3 (9 HSPs)
chr3 (44-210)||(25807125-25807294)
chr3 (47-253)||(44521141-44521350)
chr3 (173-256)||(43465918-43466001)
chr3 (46-152)||(25894522-25894630)
chr3 (140-256)||(7441420-7441535)
chr3 (161-256)||(3650601-3650695)
chr3 (201-256)||(25809750-25809805)
chr3 (321-371)||(25893008-25893058)
chr3 (168-210)||(25893114-25893156)
[»] scaffold1390 (2 HSPs)
scaffold1390 (46-252)||(722-931)
scaffold1390 (327-371)||(1001-1045)
[»] chr1 (11 HSPs)
chr1 (50-256)||(27324721-27324920)
chr1 (175-256)||(43058704-43058785)
chr1 (46-256)||(12882617-12882834)
chr1 (182-254)||(15842236-15842308)
chr1 (46-180)||(43060111-43060250)
chr1 (30-137)||(18113642-18113749)
chr1 (30-110)||(15842124-15842204)
chr1 (181-233)||(18113804-18113856)
chr1 (274-359)||(43058609-43058695)
chr1 (274-371)||(27324940-27325037)
chr1 (179-256)||(17879633-17879709)
[»] chr5 (4 HSPs)
chr5 (179-256)||(6228727-6228804)
chr5 (179-256)||(42141258-42141334)
chr5 (207-256)||(18660050-18660099)
chr5 (192-252)||(30062494-30062554)
[»] scaffold0008 (2 HSPs)
scaffold0008 (179-256)||(36113-36190)
scaffold0008 (179-224)||(10617-10662)
[»] chr4 (2 HSPs)
chr4 (179-256)||(43226357-43226433)
chr4 (179-254)||(50376065-50376139)
[»] chr8 (7 HSPs)
chr8 (46-146)||(25269919-25270019)
chr8 (46-129)||(36257516-36257599)
chr8 (279-371)||(25270047-25270139)
chr8 (191-244)||(33180319-33180372)
chr8 (191-252)||(35416615-35416676)
chr8 (103-169)||(17032804-17032869)
chr8 (103-169)||(17563240-17563305)
[»] scaffold2061 (1 HSPs)
scaffold2061 (184-254)||(355-425)


Alignment Details
Target: chr7 (Bit Score: 268; Significance: 1e-149; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 30 - 483
Target Start/End: Original strand, 25090121 - 25090580
Alignment:
Q  30 gtagtggcccacctagaaaattaaaaatcataggtttattctacgattttttaaaccatttttcatcggtttgggttttcgacggttctaaaaatgacat 129  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||| |||||||||||| ||||| ||||||    
T  25090121 gtagtggcccacctagaaaattaaaaatcataggtttattttacgagtttttaaaccatttttcaacggtttggattttcgacggttttaaaagtgacat 25090220  T
Q  130 gtgattttcgtcatgcttatactt-gttgggcagcggaggtctgcatacattctaattttttggggtttcaaatctcctttatattttcttgtcaactga 228  Q
    |||||||||||||||||||||||| |||||| || |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25090221 gtgattttcgtcatgcttatacttggttgggtagtggaggtctacagacattctaattttttggggtttcaaatctcctttatattttcttgtcaactga 25090320  T
Q  229 aaatttctccaattaacagttgtattat-----nnnnnnnnnnnnnnnnngattcgtaatttatactagtattaaactatgtaatttannnnnnnaaagt 323  Q
    ||||||||| |||||| |||||||||||                      ||||||||||||||||||||||||||||||||||||||       ||||     
T  25090321 aaatttctcaaattaatagttgtattataaaaaaaataaaaataaaaaaagattcgtaatttatactagtattaaactatgtaatttattttttcaaagc 25090420  T
Q  324 acctgagttttttagtcaaacttttaatggtccacctaaacaatttttattggcttcacaacatacatacgaggtcatacttacatgaaacaaacatctt 423  Q
    ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |  |||| ||||||| ||||||||||||||||||||||||||    
T  25090421 acctgagttttctagtcaaacttttaatggtccatctaaacaatttttattggcttcgccgcatatatacgagatcatacttacatgaaacaaacatctt 25090520  T
Q  424 cccaatcatctcttttctgaattgcagaccacatatcaatggcctttattttcatctcac 483  Q
     ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  25090521 tccaatcatctcttttctaaattgcagaccacatatcaatgacctttattttcatctcac 25090580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 399 - 483
Target Start/End: Original strand, 25062595 - 25062679
Alignment:
Q  399 catacttacatgaaacaaacatcttcccaatcatctcttttctgaattgcagaccacatatcaatggcctttattttcatctcac 483  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||    
T  25062595 catacttacatgaaacaaacatctctccaatcatctcttttctgaattgcagaccacatatcaatgacctttatgttcatctcac 25062679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 401 - 483
Target Start/End: Original strand, 25084206 - 25084288
Alignment:
Q  401 tacttacatgaaacaaacatcttcccaatcatctcttttctgaattgcagaccacatatcaatggcctttattttcatctcac 483  Q
    |||||||| |||||||||||||  |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  25084206 tacttacacgaaacaaacatctctccaatcatctattttctgaattgcagaccacaaatcaatggcctttattttcatctcac 25084288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 399 - 483
Target Start/End: Original strand, 25071298 - 25071382
Alignment:
Q  399 catacttacatgaaacaaacatcttcccaatcatctcttttctgaattgcagaccacatatcaatggcctttattttcatctcac 483  Q
    ||||||||||||||||||| ||||  ||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||    
T  25071298 catacttacatgaaacaaaaatctctccaatcatctcttttttgaattgcagaccacgtatcaatggccttgattttcatctcac 25071382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 179 - 256
Target Start/End: Original strand, 4998443 - 4998520
Alignment:
Q  179 ttctaattttttggggtttcaaatctcctttatattttcttgtcaactgaaaatttctccaattaacagttgtattat 256  Q
    ||||||||||| ||||||||||||||  |||||||| ||||||||||||||||||   |||||||| |||||||||||    
T  4998443 ttctaatttttcggggtttcaaatcttttttatattgtcttgtcaactgaaaattctcccaattaagagttgtattat 4998520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 78 - 229
Target Start/End: Original strand, 19706078 - 19706231
Alignment:
Q  78 ttttaaaccatttttcatcggtttgggttttcgacggttctaaaaatgacatgtgat-tttcgtcatgcttatactt-gttgggcagcggaggtctgcat 175  Q
    |||||||| |||||||| | |||| ||||||||||||||| ||||||||||| || | |||  |||| ||||||||| |||||  || |||||| | |||    
T  19706078 ttttaaacaatttttcaacagtttaggttttcgacggttccaaaaatgacatatgttattttttcattcttatacttggttggttagtggaggtttacat 19706177  T
Q  176 acattctaattttttggggtttcaaatctcctttatattttcttgtcaactgaa 229  Q
    || || || ||||||||||||||||||||| || ||||| ||| ||||| ||||    
T  19706178 accttatatttttttggggtttcaaatctctttgatattgtctggtcaaatgaa 19706231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 402 - 478
Target Start/End: Original strand, 25058388 - 25058464
Alignment:
Q  402 acttacatgaaacaaacatcttcccaatcatctcttttctgaattgcagaccacatatcaatggcctttattttcat 478  Q
    ||||||||||||||||| |||| ||||||||||||| ||||||||  |||||||| |||||||||||| || |||||    
T  25058388 acttacatgaaacaaacttctttccaatcatctcttctctgaattaaagaccacaaatcaatggccttgatgttcat 25058464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 191 - 244
Target Start/End: Complemental strand, 38570127 - 38570074
Alignment:
Q  191 ggggtttcaaatctcctttatattttcttgtcaactgaaaatttctccaattaa 244  Q
    ||||||||||| |||||||||||| ||||||||||| ||||| ||| |||||||    
T  38570127 ggggtttcaaacctcctttatattgtcttgtcaactaaaaatctcttcaattaa 38570074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 105 - 197
Target Start/End: Original strand, 19706246 - 19706338
Alignment:
Q  105 ttttcgacggttctaaaaatgacatgtgattttcgtcatgcttatacttgttgggcagcggaggtctgcatacattctaattttttggggttt 197  Q
    |||||| |||||| |||| ||||||||||||||  ||||||||||||| | |||  | ||||||| | ||||| ||||| |||||| ||||||    
T  19706246 ttttcggcggttccaaaagtgacatgtgatttttttcatgcttatactggctggttatcggaggtttacataccttctattttttttgggttt 19706338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 184 - 254
Target Start/End: Original strand, 19706368 - 19706438
Alignment:
Q  184 attttttggggtttcaaatctcctttatattttcttgtcaactgaaaatttctccaattaacagttgtatt 254  Q
    ||||||| |||||||||||||| || ||||| ||| ||||| |||||||| | |||| ||| |||||||||    
T  19706368 atttttttgggtttcaaatctctttgatattgtctggtcaaatgaaaattcccccaactaagagttgtatt 19706438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 119; Significance: 1e-60; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 46 - 255
Target Start/End: Complemental strand, 11482901 - 11482691
Alignment:
Q  46 aaaattaaaaatcataggtttattctacgattttttaaaccatttttcatcggtttgggttttcgacggttctaaaaatgacatgtgattttcgtcatgc 145  Q
    |||||||||||| ||||||||||| ||||| ||||||||| ||||||||  ||||| |||||||||||||||||||| | |||||||||||| |||||||    
T  11482901 aaaattaaaaattataggtttattttacgagtttttaaacaatttttcaatggtttaggttttcgacggttctaaaagtaacatgtgatttttgtcatgc 11482802  T
Q  146 ttatacttg-ttgggcagcggaggtctgcatacattctaattttttggggtttcaaatctcctttatattttcttgtcaactgaaaatttctccaattaa 244  Q
    ||||||||| || || ||||||||| | ||||| ||||||||||| ||| |||||||||||||||||||| ||||||||| |||||||| || |||||||    
T  11482801 ttatacttgttttggtagcggaggtttacataccttctaatttttcgggttttcaaatctcctttatattgtcttgtcaattgaaaattccttcaattaa 11482702  T
Q  245 cagttgtatta 255  Q
    |||||||||||    
T  11482701 cagttgtatta 11482691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 46 - 256
Target Start/End: Original strand, 27640770 - 27640982
Alignment:
Q  46 aaaattaaaaatcataggtttattctacgattttttaaaccatttttcatcggtttgggttttcgacggttctaaaaatgacatgtgattttcgtcatgc 145  Q
    ||||||||||||||||||| |||| ||||| ||||||||| ||||||||  |||||| ||||| | ||||||||||| |||||||||||||| |||||||    
T  27640770 aaaattaaaaatcataggtctattttacgagtttttaaacaatttttcaatggtttgagtttttggcggttctaaaagtgacatgtgatttttgtcatgc 27640869  T
Q  146 ttatactt-gttgggcagcggaggtctgcatacattctaattttttggggtttcaaatctcc-tttatattttcttgtcaactgaaaatttctccaatta 243  Q
    |||||||| |||||||||| ||||| | ||||  |||||||||| ||||||||||||| ||| |||||||| ||||||||| |||||||| |||||||||    
T  27640870 ttatacttggttgggcagcagaggtttacatatcttctaattttctggggtttcaaatatccttttatattgtcttgtcaattgaaaattcctccaatta 27640969  T
Q  244 acagttgtattat 256  Q
    | |||||||||||    
T  27640970 atagttgtattat 27640982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 31 - 256
Target Start/End: Original strand, 8263374 - 8263600
Alignment:
Q  31 tagtggcccacctagaaaattaaaaatcataggtttattctacgattttttaaaccatttttcatcggtttgggttttcgacggttctaaaaatgacatg 130  Q
    |||||||||||||  |||||| |||||||||||  |||| ||||| ||| ||||| |||||||| || |||||||||||| |  || ||||| |||||||    
T  8263374 tagtggcccacctgtaaaatttaaaatcataggcctattttacgagtttctaaacaatttttcaacgatttgggttttcggcaattttaaaagtgacatg 8263473  T
Q  131 tgattttcgtcatgcttatacttg-ttgggcagcggaggtctgcatacattctaattttttggggtttcaaatctcctttatattttcttgtcaactgaa 229  Q
    ||||||| |||||||||| ||||| ||||| |||| | || | || || || ||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  8263474 tgatttttgtcatgcttacacttggttgggtagcgaaagtttacaaaccttataattttttggagtttcaaatctcctttatattgtcttgtcaactgaa 8263573  T
Q  230 aatttctccaattaacagttgtattat 256  Q
    ||||||||||||||||| || ||||||    
T  8263574 aatttctccaattaacaattctattat 8263600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 179 - 256
Target Start/End: Complemental strand, 17354534 - 17354457
Alignment:
Q  179 ttctaattttttggggtttcaaatctcctttatattttcttgtcaactgaaaatttctccaattaacagttgtattat 256  Q
    ||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||   |||||||| |||||||||||    
T  17354534 ttctaatttttgggggtttcaaatctcttttatattgtcttgtcaactgaaaattctcccaattaagagttgtattat 17354457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 187 - 256
Target Start/End: Original strand, 42473875 - 42473944
Alignment:
Q  187 ttttggggtttcaaatctcctttatattttcttgtcaactgaaaatttctccaattaacagttgtattat 256  Q
    |||||| |||||||||||| |||||||  | ||||||| |||||||||| | |||||| |||||||||||    
T  42473875 ttttggagtttcaaatctcttttatataatattgtcaattgaaaatttcccaaattaagagttgtattat 42473944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0778 (Bit Score: 87; Significance: 2e-41; HSPs: 2)
Name: scaffold0778
Description:

Target: scaffold0778; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 46 - 252
Target Start/End: Complemental strand, 1382 - 1173
Alignment:
Q  46 aaaattaaaaatcataggtttattctacgattttttaaaccatttttcatcggtttgggttttcgacggttctaaaaatgacat--gtgattttcgtcat 143  Q
    ||||||| ||||||||||| |||| ||||| ||||||||  |||||||| |||||| ||||||||   ||||||||| ||||||  ||||| ||  ||||    
T  1382 aaaattataaatcataggtctattttacgagtttttaaataatttttcaacggtttaggttttcggttgttctaaaagtgacatatgtgatatttatcat 1283  T
Q  144 gcttatacttg-ttgggcagcggaggtctgcatacattctaattttttggggtttcaaatctcctttatattttcttgtcaactgaaaatttctccaatt 242  Q
    ||||||||||| ||||| |||||| |||||||||| ||||||||| |||||||||||||||||||||||| | || |||||| |||||||| ||||| ||    
T  1282 gcttatacttggttgggtagcggatgtctgcatactttctaatttattggggtttcaaatctcctttatactatcctgtcaattgaaaattcctccactt 1183  T
Q  243 aacagttgta 252  Q
    || |||||||    
T  1182 aagagttgta 1173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0778; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 327 - 359
Target Start/End: Complemental strand, 1103 - 1071
Alignment:
Q  327 tgagttttttagtcaaacttttaatggtccacc 359  Q
    |||||||||||||||||||||| ||||||||||    
T  1103 tgagttttttagtcaaacttttgatggtccacc 1071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 6e-32; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 44 - 210
Target Start/End: Original strand, 25807125 - 25807294
Alignment:
Q  44 agaaaattaaaaatcataggtttattctacgattttttaaaccatttttcatcggtttgggttttcgacggttctaaaaatgac--atgtgattttcgtc 141  Q
    |||||||| | ||| |||||| |||| ||||| ||||||||| ||||||||  |||||||||||||| ||||||||||| ||||  |||||||||| |||    
T  25807125 agaaaatttataattataggtctattttacgagtttttaaacaatttttcaatggtttgggttttcggcggttctaaaagtgacatatgtgatttttgtc 25807224  T
Q  142 atgcttatactt-gttgggcagcggaggtctgcatacattctaattttttggggtttcaaatctccttta 210  Q
    ||||||||| || |||||| ||||||||| | ||||| || ||||||||||| |||||||||||| ||||    
T  25807225 atgcttatatttggttgggtagcggaggtttacataccttttaattttttggtgtttcaaatctcattta 25807294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 47 - 253
Target Start/End: Complemental strand, 44521350 - 44521141
Alignment:
Q  47 aaattaaaaatcataggtttattctacgattttttaaaccatttttcatcggtttgggttttcgacggttctaaaaatgacat--gtgattttcgtc-at 143  Q
    ||||||||||||| || |||||| ||||| ||||||||| |||||| |  ||||| |||||||| ||||||||||| ||||||  ||||||||   | ||    
T  44521350 aaattaaaaatcacagatttattttacgagtttttaaacaattttttaatggtttaggttttcggcggttctaaaagtgacatatgtgattttttaccat 44521251  T
Q  144 gcttatacttg-ttgggcagcggaggtctgcatacattctaattttttggggtttcaaatctcctttatattttcttgtcaactgaaaatttctccaatt 242  Q
    || |||| ||| ||||| ||||||||| | ||  | |||||||||| | ||||||||||||| || |||||| |||||||| ||||||||| ||| ||||    
T  44521250 gcctatatttggttgggtagcggaggtttacaggc-ttctaattttgtagggtttcaaatcttctatatattatcttgtcagctgaaaattcctctaatt 44521152  T
Q  243 aacagttgtat 253  Q
    |||| ||||||    
T  44521151 aacaattgtat 44521141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 173 - 256
Target Start/End: Original strand, 43465918 - 43466001
Alignment:
Q  173 catacattctaattttttggggtttcaaatctcctttatattttcttgtcaactgaaaatttctccaattaacagttgtattat 256  Q
    ||||| ||||| ||||||||||||||||||||| || ||||| ||||||||| |||||||| |||||||||| |||||||||||    
T  43465918 cataccttctatttttttggggtttcaaatctctttgatattgtcttgtcaaatgaaaattcctccaattaagagttgtattat 43466001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 46 - 152
Target Start/End: Complemental strand, 25894630 - 25894522
Alignment:
Q  46 aaaattaaaaatcataggtttattctacgattttttaaaccatttttcatcggtttgggttttcgacggttctaaaaatg--acatgtgattttcgtcat 143  Q
    ||||| ||||||||||||| |||| |||||  |||||||  |||||||| |||||||||||||||  |||||||||| ||  | ||||||||||  ||||    
T  25894630 aaaataaaaaatcataggtctattttacgaggttttaaataatttttcaacggtttgggttttcggtggttctaaaagtgatatatgtgatttttatcat 25894531  T
Q  144 gcttatact 152  Q
    |||||||||    
T  25894530 gcttatact 25894522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 140 - 256
Target Start/End: Complemental strand, 7441535 - 7441420
Alignment:
Q  140 tcatgcttatacttgt-tgggcagcggaggtctgcatacattctaattttttggggtttcaaatctcctttatattttcttgtcaactgaaaatttctcc 238  Q
    |||||||||||||||  |||  ||||||||| | || || |||| |||||| |||||||||||||||  ||||||| || ||| |||||||||||   ||    
T  7441535 tcatgcttatacttggctggttagcggaggtttccaaaccttctgatttttgggggtttcaaatctc--ttatattgtcctgtgaactgaaaattctccc 7441438  T
Q  239 aattaacagttgtattat 256  Q
    |||||| |||||||||||    
T  7441437 aattaagagttgtattat 7441420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 161 - 256
Target Start/End: Original strand, 3650601 - 3650695
Alignment:
Q  161 agcggaggtctgcatacattctaattttttggggtttcaaatctcctttatattttcttgtcaactgaaaatttctccaattaacagttgtattat 256  Q
    ||||||||| | || || ||||||||| | ||||||||||| |||| | ||||| | ||||||||| ||||||  ||||||||||| |||||||||    
T  3650601 agcggaggtttacaaaccttctaatttctgggggtttcaaacctccctcatattgt-ttgtcaactaaaaattgttccaattaacatttgtattat 3650695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 201 - 256
Target Start/End: Original strand, 25809750 - 25809805
Alignment:
Q  201 atctcctttatattttcttgtcaactgaaaatttctccaattaacagttgtattat 256  Q
    ||||| |||| ||| ||||||||||| ||||||  |||||||||||||||||||||    
T  25809750 atctcatttacattgtcttgtcaactaaaaattcatccaattaacagttgtattat 25809805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 321 - 371
Target Start/End: Complemental strand, 25893058 - 25893008
Alignment:
Q  321 agtacctgagttttttagtcaaacttttaatggtccacctaaacaattttt 371  Q
    |||||| ||||||||||||||||||||| |||| ||||| ||| |||||||    
T  25893058 agtacccgagttttttagtcaaacttttgatggcccacccaaataattttt 25893008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 210
Target Start/End: Complemental strand, 25893156 - 25893114
Alignment:
Q  168 gtctgcatacattctaattttttggggtttcaaatctccttta 210  Q
    |||| ||||| |||||||||| |||||||||||||||||||||    
T  25893156 gtctacatactttctaattttgtggggtttcaaatctccttta 25893114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1390 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: scaffold1390
Description:

Target: scaffold1390; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 46 - 252
Target Start/End: Original strand, 722 - 931
Alignment:
Q  46 aaaattaaaaatcataggtttattctacgattttttaaaccatttttcatcggtttgggttttcgacggttctaaaaatgacat--gtgattttcgtcat 143  Q
    |||||| ||||| |||||| |||| ||||| ||||||||  |||||||| | |||| ||||||||   ||||||||| ||||||  ||||||||  ||||    
T  722 aaaattgaaaataataggtgtattttacgagtttttaaataatttttcaacagtttaggttttcggttgttctaaaagtgacatatgtgatttttatcat 821  T
Q  144 gcttatactt-gttgggcagcggaggtctgcatacattctaattttttggggtttcaaatctcctttatattttcttgtcaactgaaaatttctccaatt 242  Q
    ||||||| || |||||| |||||| || | ||||| || |||||| |||||||||||||||||||||||| | || |||||| |||||||| ||||| ||    
T  822 gcttatatttcgttgggtagcggatgtttacatactttataatttattggggtttcaaatctcctttatactatcctgtcaattgaaaattcctccactt 921  T
Q  243 aacagttgta 252  Q
    || |||||||    
T  922 aagagttgta 931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1390; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 327 - 371
Target Start/End: Original strand, 1001 - 1045
Alignment:
Q  327 tgagttttttagtcaaacttttaatggtccacctaaacaattttt 371  Q
    ||||||||||||||||| |||| |||||||||| |||||||||||    
T  1001 tgagttttttagtcaaagttttgatggtccacccaaacaattttt 1045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 9e-25; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 50 - 256
Target Start/End: Original strand, 27324721 - 27324920
Alignment:
Q  50 ttaaaaatcataggtttattctacgattttttaaaccatttttcatcggtttgggttttcgacggttctaaaaatgac--atgtgattttcgtcatgctt 147  Q
    ||||||| ||||||| | || ||||| ||||||||| |||||||| |||||||| |||||| ||||||||||||||||  |||||||||| |||||||||    
T  27324721 ttaaaaaccataggtctgttttacgagtttttaaacaatttttcaacggtttggattttcggcggttctaaaaatgacatatgtgatttttgtcatgctt 27324820  T
Q  148 atactt-gttgggcagcggaggtctgcatacattctaattttttggggtttcaaatctcctttatattttcttgtcaactgaaaatttctccaattaaca 246  Q
     | ||| |||||  || | |||| | ||  | |||||| |||||||||||||||         ||||| |||||||||||||||||| ||||||||||||    
T  27324821 tttcttggttggatagtgaaggtttacaagccttctaa-tttttggggtttcaa---------atattatcttgtcaactgaaaattgctccaattaaca 27324910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 175 - 256
Target Start/End: Complemental strand, 43058785 - 43058704
Alignment:
Q  175 tacattctaattttttggggtttcaaatctcctttatattttcttgtcaactgaaaatttctccaattaacagttgtattat 256  Q
    |||||| |||| |||||||||||||||||||||||||||| |||||||| ||||||||| ||| ||||||||||||||||||    
T  43058785 tacattttaatgttttggggtttcaaatctcctttatattgtcttgtcatctgaaaattcctcaaattaacagttgtattat 43058704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 46 - 256
Target Start/End: Complemental strand, 12882834 - 12882617
Alignment:
Q  46 aaaattaaaaatcataggtttattctacgattttttaaaccatttttcatcggt---ttgggttttcgacggttctaaaaatgacat--gtgatt-ttcg 139  Q
    |||||||||| |||||||  |||| | |||  |||||||| |||||||| | ||   || |||||||| ||||||||||| ||||||  |||||| ||      
T  12882834 aaaattaaaattcataggactattttgcgaggttttaaacaatttttcaacagtattttaggttttcggcggttctaaaagtgacatatgtgattatttt 12882735  T
Q  140 tcatgcttatacttg-ttgggcagcggaggtctgcatacattctaattttttggggtttcaaatctcctttatattt-tcttgtcaactgaaaatttctc 237  Q
    ||||||||||||||| ||||  |||| || | |  | || |||||||||||||||||||||||| || ||||||||| |||||||||||||||| ||| |    
T  12882734 tcatgcttatacttggttggttagcgaagctttcaagaccttctaattttttggggtttcaaatatcttttatatttgtcttgtcaactgaaaa-ttccc 12882636  T
Q  238 caattaacagttgtattat 256  Q
    ||||||| |||||||||||    
T  12882635 caattaagagttgtattat 12882617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 182 - 254
Target Start/End: Original strand, 15842236 - 15842308
Alignment:
Q  182 taattttttggggtttcaaatctcctttatattttcttgtcaactgaaaatttctccaattaacagttgtatt 254  Q
    ||||||||||||||||||||||| ||||||||  |||||||||||||||||| | ||||| ||||||||||||    
T  15842236 taattttttggggtttcaaatcttctttatatagtcttgtcaactgaaaattccaccaatcaacagttgtatt 15842308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 46 - 180
Target Start/End: Complemental strand, 43060250 - 43060111
Alignment:
Q  46 aaaattaaaaatcataggtttattctacgattttttaaaccatttttcatcggtttgggttttcgacggttcta-aaaatg---acatgtgattttcgtc 141  Q
    ||||||||| |||||||||  ||| ||||   |||||||| |||||||| ||||||||||||||  |||||||| ||||||   | |||||||||| |||    
T  43060250 aaaattaaatatcataggtcaattttacggggttttaaacaatttttcaacggtttgggttttcagcggttctataaaatggacatatgtgatttttgtc 43060151  T
Q  142 atgcttatactt-gttgggcagcggaggtctgcatacatt 180  Q
    |||||||||||| |||||| ||||||||| | ||||||||    
T  43060150 atgcttatacttggttgggtagcggaggtttacatacatt 43060111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 30 - 137
Target Start/End: Original strand, 18113642 - 18113749
Alignment:
Q  30 gtagtggcccacctagaaaattaaaaatcataggtttattctacgattttttaaaccatttttcatcggtttgggttttcgacggttctaaaaatgacat 129  Q
    |||||| |||||||  ||||||||||||||||||| |||| | |||  |||||||| ||||||||  |||||| ||||||| |||||| ||||  |||||    
T  18113642 gtagtgacccacctcaaaaattaaaaatcataggtctattttgcgaggttttaaacaatttttcaatggtttgagttttcggcggttccaaaagcgacat 18113741  T
Q  130 gtgatttt 137  Q
    ||||||||    
T  18113742 gtgatttt 18113749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 30 - 110
Target Start/End: Original strand, 15842124 - 15842204
Alignment:
Q  30 gtagtggcccacctagaaaattaaaaatcataggtttattctacgattttttaaaccatttttcatcggtttgggttttcg 110  Q
    ||||||||||| ||| |||||||||||| |||||| |||| ||| ||| ||||||| | |||||| | |||||||||||||    
T  15842124 gtagtggcccatctaaaaaattaaaaattataggtctattttacaattatttaaacaaattttcaacagtttgggttttcg 15842204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 181 - 233
Target Start/End: Original strand, 18113804 - 18113856
Alignment:
Q  181 ctaattttttggggtttcaaatctcctttatattttcttgtcaactgaaaatt 233  Q
    ||||||||  ||||||||||||||| |||||||| ||||||||||||||||||    
T  18113804 ctaattttggggggtttcaaatctcatttatattgtcttgtcaactgaaaatt 18113856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 274 - 359
Target Start/End: Complemental strand, 43058695 - 43058609
Alignment:
Q  274 gattcgtaatttatactagtattaaactatgtaatttannnnnnn-aaagtacctgagttttttagtcaaacttttaatggtccacc 359  Q
    |||| ||||||||||  |||| ||||||||||||||||        |||||||||||| |||||||||||||||||||||| |||||    
T  43058695 gatttgtaatttatagaagtagtaaactatgtaatttattttttttaaagtacctgagctttttagtcaaacttttaatggcccacc 43058609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 274 - 371
Target Start/End: Original strand, 27324940 - 27325037
Alignment:
Q  274 gattcgtaatttatactagtattaaactatgtaatttannnnnnnaaagtacctgagttttttagtcaaacttttaatggtccacctaaacaattttt 371  Q
    |||||||||||||||  |||| ||||||| ||||||||       || ||||| ||| |||||||||||||||||||||| ||| | |||| ||||||    
T  27324940 gattcgtaatttatagcagtagtaaactacgtaatttatttttctaatgtacccgagatttttagtcaaacttttaatggcccatccaaactattttt 27325037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 256
Target Start/End: Complemental strand, 17879709 - 17879633
Alignment:
Q  179 ttctaattttttggggtttcaaatctcctttatattttcttgtcaactgaaaatttctccaattaacagttgtattat 256  Q
    ||||||||| | || |||||||| |||| ||||||| | |||||||| |||||||  ||||||||||| |||||||||    
T  17879709 ttctaatttgtaggagtttcaaacctcccttatattgt-ttgtcaaccgaaaattattccaattaacatttgtattat 17879633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 179 - 256
Target Start/End: Complemental strand, 6228804 - 6228727
Alignment:
Q  179 ttctaattttttggggtttcaaatctcctttatattttcttgtcaactgaaaatttctccaattaacagttgtattat 256  Q
    ||||||||||| ||||||||||| ||| |||||||| |||||||||||||||||| | |||||||| |||||||||||    
T  6228804 ttctaatttttgggggtttcaaacctcgtttatattatcttgtcaactgaaaattcccccaattaagagttgtattat 6228727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 179 - 256
Target Start/End: Original strand, 42141258 - 42141334
Alignment:
Q  179 ttctaattttttggggtttcaaatctcctttatattttcttgtcaactgaaaatttctccaattaacagttgtattat 256  Q
    ||||||||| | ||||||||||| |||| ||||||| | ||| ||||||||||||  ||||||||||| |||||||||    
T  42141258 ttctaatttgtgggggtttcaaacctcccttatattgt-ttggcaactgaaaattgttccaattaacatttgtattat 42141334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 207 - 256
Target Start/End: Original strand, 18660050 - 18660099
Alignment:
Q  207 tttatattttcttgtcaactgaaaatttctccaattaacagttgtattat 256  Q
    |||||||| |||||||||||||||||| | |||||||||| |||| ||||    
T  18660050 tttatattgtcttgtcaactgaaaattcccccaattaacaattgtgttat 18660099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 192 - 252
Target Start/End: Complemental strand, 30062554 - 30062494
Alignment:
Q  192 gggtttcaaatctcctttatattttcttgtcaactgaaaatttctccaattaacagttgta 252  Q
    |||||||||||||||  |||||| || |||||||||||||||  | ||||||||| |||||    
T  30062554 gggtttcaaatctcccgtatattgtcatgtcaactgaaaattctttcaattaacaattgta 30062494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 179 - 256
Target Start/End: Original strand, 36113 - 36190
Alignment:
Q  179 ttctaattttttggggtttcaaatctcctttatattttcttgtcaactgaaaatttctccaattaacagttgtattat 256  Q
    ||||||| ||| ||||||||||||||| |||||||| ||||||||| ||||||||   |||||||| |||||||||||    
T  36113 ttctaatctttgggggtttcaaatctcttttatattgtcttgtcaattgaaaattctcccaattaagagttgtattat 36190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 10617 - 10662
Alignment:
Q  179 ttctaattttttggggtttcaaatctcctttatattttcttgtcaa 224  Q
    ||||||||||| ||| ||||||||||| |||||||| |||||||||    
T  10617 ttctaatttttggggatttcaaatctcttttatattgtcttgtcaa 10662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 179 - 256
Target Start/End: Original strand, 43226357 - 43226433
Alignment:
Q  179 ttctaattttttggggtttcaaatctcctttatattttcttgtcaactgaaaatttctccaattaacagttgtattat 256  Q
    |||| |||||| ||||||||||||||| |||||||| |||  |||| ||||||||||||||||||| |||||||||||    
T  43226357 ttctgatttttgggggtttcaaatctcttttatattgtcta-tcaattgaaaatttctccaattaagagttgtattat 43226433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 179 - 254
Target Start/End: Complemental strand, 50376139 - 50376065
Alignment:
Q  179 ttctaattttttggggtttcaaatctcctttatattttcttgtcaactgaaaatttctccaattaacagttgtatt 254  Q
    ||||||||| | || |||||||| |||| ||||||| | ||||||||||||||||  ||||||||||| |||||||    
T  50376139 ttctaatttgtgggagtttcaaacctcccttatattgt-ttgtcaactgaaaattgttccaattaacatttgtatt 50376065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 46 - 146
Target Start/End: Original strand, 25269919 - 25270019
Alignment:
Q  46 aaaattaaaaatcataggtttattctacgattttttaaaccatttttcatcggtttgggttttcgacggttctaaaaatgacatgtgattttcgtcatgc 145  Q
    ||||||||||||  |||||  ||| ||||| ||||||||| | |||||| | |||||| ||||||  |||||||||| |||||||||||||| |||||||    
T  25269919 aaaattaaaaattgtaggtcaattttacgagtttttaaacaaattttcagcagtttggattttcggtggttctaaaagtgacatgtgatttttgtcatgc 25270018  T
Q  146 t 146  Q
    |    
T  25270019 t 25270019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 46 - 129
Target Start/End: Complemental strand, 36257599 - 36257516
Alignment:
Q  46 aaaattaaaaatcataggtttattctacgattttttaaaccatttttcatcggtttgggttttcgacggttctaaaaatgacat 129  Q
    ||||||||||||||| |||  ||| | ||| ||||||||| |||||||| | ||||  ||||||||| ||||||||||||||||    
T  36257599 aaaattaaaaatcattggtccattttgcgagtttttaaacaatttttcaacagttttagttttcgacagttctaaaaatgacat 36257516  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 279 - 371
Target Start/End: Original strand, 25270047 - 25270139
Alignment:
Q  279 gtaatttatactagtattaaactatgtaatttannnnnnnaaagtacctgagttttttagtcaaacttttaatggtccacctaaacaattttt 371  Q
    |||||||||| ||||| ||||||||||||||||       |||||||| ||  |||||||||||  ||||||||| ||||| |||| ||||||    
T  25270047 gtaatttatagtagtagtaaactatgtaatttatttttttaaagtacccgacctttttagtcaagtttttaatggcccacccaaactattttt 25270139  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 191 - 244
Target Start/End: Complemental strand, 33180372 - 33180319
Alignment:
Q  191 ggggtttcaaatctcctttatattttcttgtcaactgaaaatttctccaattaa 244  Q
    ||||||| ||| |||||||||||| || ||||||||||||||| || |||||||    
T  33180372 ggggttttaaacctcctttatattatcatgtcaactgaaaattccttcaattaa 33180319  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 191 - 252
Target Start/End: Original strand, 35416615 - 35416676
Alignment:
Q  191 ggggtttcaaatctcctttatattttcttgtcaactgaaaatttctccaattaacagttgta 252  Q
    ||||||||||| |||| ||||||| || |||| | | |||||| ||||||||||||||||||    
T  35416615 ggggtttcaaacctcccttatattgtcatgtcgagttaaaattcctccaattaacagttgta 35416676  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 103 - 169
Target Start/End: Complemental strand, 17032869 - 17032804
Alignment:
Q  103 ggttttcgacggttctaaaaatgacatgtgattttcgtcatgcttatactt-gttgggcagcggaggt 169  Q
    |||||| |||||||||||||||  ||||||||||| |||| | |||||||| |||||| |||||||||    
T  17032869 ggtttttgacggttctaaaaat--catgtgatttttgtcaggtttatacttggttgggtagcggaggt 17032804  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 103 - 169
Target Start/End: Complemental strand, 17563305 - 17563240
Alignment:
Q  103 ggttttcgacggttctaaaaatgacatgtgattttcgtcatgcttatactt-gttgggcagcggaggt 169  Q
    |||||| |||||||||||||||  ||||||||||| |||| | |||||||| |||||| |||||||||    
T  17563305 ggtttttgacggttctaaaaat--catgtgatttttgtcaggtttatacttggttgggtagcggaggt 17563240  T

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Target: scaffold2061 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold2061
Description:

Target: scaffold2061; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 184 - 254
Target Start/End: Original strand, 355 - 425
Alignment:
Q  184 attttttggggtttcaaatctcctttatattttcttgtcaactgaaaatttctccaattaacagttgtatt 254  Q
    ||||||| |||||||||||||| || ||||| ||| ||||| |||||||| | |||||||| |||||||||    
T  355 atttttttgggtttcaaatctctttgatattgtctggtcaaatgaaaattcccccaattaagagttgtatt 425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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