View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0899_low_7 (Length: 416)
Name: NF0899_low_7
Description: NF0899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0899_low_7 |
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| [»] scaffold0019 (1 HSPs) |
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Alignment Details
Target: scaffold0019 (Bit Score: 136; Significance: 8e-71; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 30 - 177
Target Start/End: Complemental strand, 37239 - 37092
Alignment:
| Q |
30 |
actaagtgcttgtttggttcaacatccactttgttaatatcacgtctcaatatttattttcctttgatattacgatgctatattttacatcttcaatcta |
129 |
Q |
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| T |
37239 |
actaagtgcttgtttggttcaacatccactttgttaatatcgcgtctcaatacttattttcctttgatattacgatgctatattttacatcttctatcta |
37140 |
T |
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| Q |
130 |
atcgcacgtttaggctcacctactgcgttaacaaacacaaactaagtg |
177 |
Q |
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| T |
37139 |
atcgcacgtttaggctcacctactgcgttaacaaacacaaactaagtg |
37092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 169 - 371
Target Start/End: Original strand, 32099703 - 32099910
Alignment:
| Q |
169 |
aactaagtgatgatcatttgctctgaaaa-aataaaactaagtgatgaatcaccttaacaaatgttgtacaacaatatattacatttgcccatagttata |
267 |
Q |
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||||||||||| ||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32099703 |
aactaagtgataatcatttcctctaaaaaaaataaaactaagtgatgaatcaccttaacaaatgttgtacaacaatatattacatttgcccatagttata |
32099802 |
T |
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| Q |
268 |
agtttgttttag-----nnnnnnnttagctcaacatataatcttcgagccaagttaataaatacgttcttttcaagtctatatatttcaatccctataac |
362 |
Q |
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|||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
32099803 |
agtttgttttagaaagaaaaaaaattagctcaacatataatcttcgagccaaattaataaatacgtt-ttttcaagtctatatatttcaatccctataac |
32099901 |
T |
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| Q |
363 |
ttatctgcg |
371 |
Q |
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|||||||| |
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| T |
32099902 |
atatctgcg |
32099910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 32099675 - 32099711
Alignment:
| Q |
1 |
acatatatattgtgatcatctattaattaactaagtg |
37 |
Q |
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| T |
32099675 |
acatatatattgtgatcatctattaattaactaagtg |
32099711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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