View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0899_low_9 (Length: 396)
Name: NF0899_low_9
Description: NF0899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0899_low_9 |
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| [»] scaffold0287 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 124; Significance: 1e-63; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 97 - 300
Target Start/End: Complemental strand, 3706740 - 3706537
Alignment:
| Q |
97 |
tgacatagtaaaacttcttgtataatcattttcttacgctgtttttggactaaccatatcatatgtaacaacgccctaactagtaaccacagagtagtta |
196 |
Q |
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|||||||||||||||||||||| ||||||||||||| |||| |||||| ||||| ||||||||||||||| |||||||| || ||| ||||| |||||| |
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| T |
3706740 |
tgacatagtaaaacttcttgta--atcattttcttacactgtgtttggaataaccttatcatatgtaacaatgccctaacaagcaacaacagactagtta |
3706643 |
T |
|
| Q |
197 |
tcatggtgcacaatttgtttgtcat--ctctatagcttgattatacacacatttttgcagaaaagagattgaaacagattaagtggagcttcctttccct |
294 |
Q |
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||||||||||||||||||||||||| ||||| | |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
3706642 |
tcatggtgcacaatttgtttgtcatctctctacaacttgatcatatacacatttttgcagaaaagagattgaaacagattaagtggagcttgctttccct |
3706543 |
T |
|
| Q |
295 |
ataact |
300 |
Q |
| |
|
||||| |
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|
| T |
3706542 |
gtaact |
3706537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 97 - 300
Target Start/End: Original strand, 3650797 - 3651000
Alignment:
| Q |
97 |
tgacatagtaaaacttcttgtataatcattttcttacgctgtttttggactaaccatatcatatgtaacaacgccctaactagtaaccacagagtagtta |
196 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| |||| |||||| ||||| ||||||||||||||| |||||||| || ||| ||||| |||||| |
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| T |
3650797 |
tgacatagtaaaacttcttgta--atcattttcttacactgtgtttggaataaccttatcatatgtaacaatgccctaacaagcaacaacagactagtta |
3650894 |
T |
|
| Q |
197 |
tcatggtgcacaatttgtttgtcatctctatagc--ttgattatacacacatttttgcagaaaagagattgaaacagattaagtggagcttcctttccct |
294 |
Q |
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||||||||||||||||||||||||||||| || ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
3650895 |
tcatggtgcacaatttgtttgtcatctctctacaatttgatcatatacacatttttgcagaaaagagattgaaacagattaagtggagcttgctttccct |
3650994 |
T |
|
| Q |
295 |
ataact |
300 |
Q |
| |
|
||||| |
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|
| T |
3650995 |
gtaact |
3651000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 153 - 300
Target Start/End: Original strand, 3658898 - 3659045
Alignment:
| Q |
153 |
tatcatatgtaacaacgccctaactagtaaccacagagtagttatcatggtgcacaatttgtttgtcatctctatagcttgattatacacacatttttgc |
252 |
Q |
| |
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||||||| |||||| ||||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||| ||||| |||||||||| ||||| |
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| T |
3658898 |
tatcatacgtaacagtgccctaactagtaacaacagactagttatcatggtgcacaatttttttgtcatctctataacttgaccatacacacatgtttgc |
3658997 |
T |
|
| Q |
253 |
agaaaagagattgaaacagattaagtggagcttcctttccctataact |
300 |
Q |
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| | ||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
3658998 |
acataagagattgaaacagattaagtggagcttgatttccctataact |
3659045 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 13 - 167
Target Start/End: Original strand, 3650243 - 3650399
Alignment:
| Q |
13 |
aaaatcgtctgtagatacattctaaacttacacattttatagttaagctcactttaaaagagccttatctatatctgataattctgaca----tagtaaa |
108 |
Q |
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|
|||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |
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| T |
3650243 |
aaaatcgtctgtagatgcattttaaacttacacattttatagttaagctcactttaaaagagccttatctatttctgataattctgacacaattagtaaa |
3650342 |
T |
|
| Q |
109 |
acttcttgtataatcattttcttacgctgtttttggactaaccatatcatatgtaacaa |
167 |
Q |
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|||||| ||||| |||||||||| ||||| |||||| |||| ||| ||||||||||| |
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| T |
3650343 |
acttct--tataaccattttcttaagctgtgtttggaataacattatgatatgtaacaa |
3650399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 171 - 300
Target Start/End: Original strand, 3652748 - 3652875
Alignment:
| Q |
171 |
cctaactagtaaccacagagtagttatcatggtgcacaatttgtttgtcatctctatagcttgattatacacacatttttgcagaaaagagattgaaaca |
270 |
Q |
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|||| ||| |||| ||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |
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| T |
3652748 |
cctatctactaacaacagactaattatcatggtgcacaatttgtttgtcatctctataacttgattatacac--atttttgcagaaaagagattgaaaca |
3652845 |
T |
|
| Q |
271 |
gattaagtggagcttcctttccctataact |
300 |
Q |
| |
|
||||||||||||||| |||||||||||||| |
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| T |
3652846 |
gattaagtggagcttgctttccctataact |
3652875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 105
Target Start/End: Original strand, 3639418 - 3639476
Alignment:
| Q |
47 |
ttttatagttaagctcactttaaaagagccttatctatatctgataattctgacatagt |
105 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||||||| |||||| ||||||| ||||| |
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| T |
3639418 |
ttttatagtcaagctcaaattaaaagagccttatctatttctgatgattctgaaatagt |
3639476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 105
Target Start/End: Original strand, 3645700 - 3645758
Alignment:
| Q |
47 |
ttttatagttaagctcactttaaaagagccttatctatatctgataattctgacatagt |
105 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||||||| |||||| ||||| ||||||| |
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|
| T |
3645700 |
ttttatagtcaagctcaaattaaaagagccttatctatttctgatgattctcacatagt |
3645758 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 153 - 228
Target Start/End: Original strand, 3639535 - 3639609
Alignment:
| Q |
153 |
tatcatatgtaacaacgccctaactagtaaccacagagtagttatcatggtgcacaatttgtttgtcatctctata |
228 |
Q |
| |
|
||||||||||||| | | | ||||||||||| | ||| || |||||||||||||| |||||||| ||||||||||| |
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| T |
3639535 |
tatcatatgtaactatgtcttaactagtaacaa-agactaattatcatggtgcacgatttgtttatcatctctata |
3639609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 105
Target Start/End: Original strand, 3637077 - 3637134
Alignment:
| Q |
48 |
tttatagttaagctcactttaaaagagccttatctatatctgataattctgacatagt |
105 |
Q |
| |
|
|||||||||||| |||||||||||||||||| || || |||| | | ||||||||||| |
|
|
| T |
3637077 |
tttatagttaagttcactttaaaagagccttgtccatttctggtgagtctgacatagt |
3637134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 3658765 - 3658809
Alignment:
| Q |
22 |
tgtagatacattctaaacttacacattttatagttaagctcactt |
66 |
Q |
| |
|
|||||||||||| | |||||| |||||||||||||||||||||| |
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|
| T |
3658765 |
tgtagatacattttcaacttaagcattttatagttaagctcactt |
3658809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0287 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0287
Description:
Target: scaffold0287; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 105
Target Start/End: Complemental strand, 9008 - 8951
Alignment:
| Q |
48 |
tttatagttaagctcactttaaaagagccttatctatatctgataattctgacatagt |
105 |
Q |
| |
|
|||||||||||| |||||||||||||||||| || || |||| | | ||||||||||| |
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|
| T |
9008 |
tttatagttaagttcactttaaaagagccttgtccatttctggtgagtctgacatagt |
8951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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