View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0900_high_12 (Length: 321)
Name: NF0900_high_12
Description: NF0900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0900_high_12 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 26 - 321
Target Start/End: Original strand, 26690834 - 26691129
Alignment:
| Q |
26 |
atcacagatggagaaaagactcataatgagagtttggtaacatgggtgagagagaaaagaaggaaattattagaaatgaaatctttggtggaacaaatag |
125 |
Q |
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| T |
26690834 |
atcacagatggagaaaagactcataatgagagtttggtaacatgggtgagagagaaaagaaggaaattattagaaatgaaatctttggtggaacaaatag |
26690933 |
T |
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| Q |
126 |
tagaccctacattgggatcaaattatgacatggttaaattggagactttcacaatggttgctttgaagtgtgttgaggaagagaaagacatgagacctaa |
225 |
Q |
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| T |
26690934 |
tagaccctacattgggatcaaattatgacatggttaaattggagactttgacaatggttgcactaaagtgtgttgaggaagagaaagacatgagacctaa |
26691033 |
T |
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| Q |
226 |
catgagtgaagttgttgaaatgcttcaaactcatgaacatgattcttgatgatatccacaaactaagagccatctttgatggttattagttttcat |
321 |
Q |
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| T |
26691034 |
catgagtgaagttgttgaaatgcttcaaactcatgaacatgattcttgatgatatgcacaaactaagagccatctttgatggttattagttttcat |
26691129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 26 - 321
Target Start/End: Original strand, 26732145 - 26732440
Alignment:
| Q |
26 |
atcacagatggagaaaagactcataatgagagtttggtaacatgggtgagagagaaaagaaggaaattattagaaatgaaatctttggtggaacaaatag |
125 |
Q |
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| T |
26732145 |
atcacagatggagaaaagactcataatgagagtttggtaacatgggtgagagagaaaagaaggaaattattagaaatgaaatctttggttgaacaaatag |
26732244 |
T |
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| Q |
126 |
tagaccctacattgggatcaaattatgacatggttaaattggagactttcacaatggttgctttgaagtgtgttgaggaagagaaagacatgagacctaa |
225 |
Q |
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| T |
26732245 |
tagaccctacattgggatcaaattatgacatggttaaatcggagactttgacaatggttgctctaaagtgtgttgaggaagagaaagacatgagacctaa |
26732344 |
T |
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| Q |
226 |
catgagtgaagttgttgaaatgcttcaaactcatgaacatgattcttgatgatatccacaaactaagagccatctttgatggttattagttttcat |
321 |
Q |
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| T |
26732345 |
catgagtgaagttgttgaaatgcttcaaactcatgaacatgattcttgatgatatgcacaaactaagagccatctttgatggttattagttttcat |
26732440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 26 - 321
Target Start/End: Original strand, 26694995 - 26695290
Alignment:
| Q |
26 |
atcacagatggagaaaagactcataatgagagtttggtaacatgggtgagagagaaaagaaggaaattattagaaatgaaatctttggtggaacaaatag |
125 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |
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| T |
26694995 |
atcacagacggagaaaagactcataatgagagtttggtaacatgggtgagagagaaaagaaggaatttatcagaaatgaaatctttggtggaacaaatag |
26695094 |
T |
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| Q |
126 |
tagaccctacattgggatcaaattatgacatggttaaattggagactttcacaatggttgctttgaagtgtgttgaggaagagaaagacatgagacctaa |
225 |
Q |
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| T |
26695095 |
tagaccctacattgggatcaaattatgacatggttaaattggagactttgacaatggttgctctaaagtgtgttgaggaagagaaagacatgagacctaa |
26695194 |
T |
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| Q |
226 |
catgagtgaagttgttgaaatgcttcaaactcatgaacatgattcttgatgatatccacaaactaagagccatctttgatggttattagttttcat |
321 |
Q |
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| T |
26695195 |
catgagtgaagttgttgaaatgcttcaaactcatgaacatgattcttcatgatatgcacaaactaagagccttctttgatggttattagttttcat |
26695290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 47 - 274
Target Start/End: Complemental strand, 26675223 - 26674996
Alignment:
| Q |
47 |
cataatgagagtttggtaacatgggtgagagagaaaagaaggaaattattagaaatgaaatctttggtggaacaaatagtagaccctacattgggatcaa |
146 |
Q |
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||||||||||| || ||||||||| | | |||||||||||||||| || |||| || || || | | ||||||||||| |||||| ||||||||| || |
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| T |
26675223 |
cataatgagaggttagtaacatggattaaagagaaaagaaggaaagaatcagaagtgggatgttggattgaacaaatagttgaccctgcattgggattaa |
26675124 |
T |
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| Q |
147 |
attatgacatggttaaattggagactttcacaatggttgctttgaagtgtgttgaggaagagaaagacatgagacctaacatgagtgaagttgttgaaat |
246 |
Q |
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| T |
26675123 |
attatgacattgttcaattgaagaccttggcagtggtggctttggattgtgtagagaaagagaaagatgttagacccaccatgagtcaagttgttgagag |
26675024 |
T |
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| Q |
247 |
gcttcaaactcatgaacatgattcttga |
274 |
Q |
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||| |||| |||| |||||||||||||| |
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| T |
26675023 |
gctccaaagtcatcaacatgattcttga |
26674996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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