View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0900_high_27 (Length: 250)
Name: NF0900_high_27
Description: NF0900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0900_high_27 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 114 - 240
Target Start/End: Complemental strand, 9562846 - 9562720
Alignment:
| Q |
114 |
ttctgtcacagaacacagcatgtaactgaacaacctctcacctgtgttcagagtctgagcctgaggtatgttccgttccaacactttggtttgtttaagg |
213 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |
|
|
| T |
9562846 |
ttctgtcacagaatacagcatgtaactgaacaacctctcacctgtgttcagagtctgagcctgaggtatgttccgttccaacactttggcttgtttaaag |
9562747 |
T |
|
| Q |
214 |
tttcatgaatttgtgttgttgtctgtg |
240 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
9562746 |
tttcatgaatttgtgttgttgtctgtg |
9562720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 115 - 240
Target Start/End: Complemental strand, 9570942 - 9570820
Alignment:
| Q |
115 |
tctgtcacagaacacagcatgtaactgaacaacctctcacctgtgttcagagtctgagcctgaggtatgttccgttccaacactttggtttgtttaaggt |
214 |
Q |
| |
|
|||| ||||||||||| ||| |||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
9570942 |
tctgccacagaacacaacatttaactgaacaacctctca---gtgttcagagtctgatactgaggtatgttctgttccaacactttggtttgtttaaggt |
9570846 |
T |
|
| Q |
215 |
ttcatgaatttgtgttgttgtctgtg |
240 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
9570845 |
ttcatgaatttgtgttgttgtctgtg |
9570820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 771 times since January 2019
Visitors: 6696