View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0900_high_30 (Length: 226)
Name: NF0900_high_30
Description: NF0900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0900_high_30 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 26732812 - 26732587
Alignment:
| Q |
1 |
tgatggtttttgattttgtaaagaaaaagataaatgtacaagcgtgggagatgaaagttttattaatctaggggtgagtatttgagtaattttctagttc |
100 |
Q |
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| T |
26732812 |
tgatggtttttgattttgtaaagaaaaagataaatgcaaaagcgtgggagatgaaagttttattaatctaggggtgagtatttgagtaattttctagttc |
26732713 |
T |
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| Q |
101 |
ttggtctttactgctccatgacttgtcttggtcaataaatctttaatatttgaaggaattccatctttactgttacatttactcaactattttttggttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26732712 |
ttggtctttactgctccatgacttgtcttggtcaataaatctttaatatttgaaggaattccatctttactgttacatttactcaactattttttggttg |
26732613 |
T |
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| Q |
201 |
caaactaaactacaaaagaaaatgac |
226 |
Q |
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| T |
26732612 |
caaactaaactgcaaaagaaaatgac |
26732587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 3 - 164
Target Start/End: Complemental strand, 26696873 - 26696699
Alignment:
| Q |
3 |
atggtttttgattttgtaaagaaaaagataaatgtacaagcgtgggagatgaaagttttattaatctaggggtgagtatttgagtaattttctagttctt |
102 |
Q |
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||||||||| ||| |||||||||||||||||||| |||| ||||||||||||| ||||||||||| |||||||||| | |||||||||||| | ||| | |
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| T |
26696873 |
atggttttttattatgtaaagaaaaagataaatgcacaaatgtgggagatgaaaattttattaatccaggggtgagtttctgagtaattttccacttcat |
26696774 |
T |
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| Q |
103 |
gg-------------tctttactgctccatgacttgtcttggtcaataaatctttaatatttgaaggaattccat |
164 |
Q |
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| T |
26696773 |
ggtcattaaaagagatctttactgatccatgacttggcttggtcaacaagtctttaatatttgtaggaattccat |
26696699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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